Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0770 ATGGTCAGCCCTCGTCTCCACATTTCTTGCCGACCGCCAATTTTTAATTTGACGTTGTCCCTATTCCGGAAAATTCCCGGAATCCTGCCGCCAAGATCCGGCGGCGACCGGCATTTTTTGCACACTACGATCATGAGTAGTCTGGTTGAGAGGCTCCGAGCAAGAACAGATCGCAAGCCCATTTACAGCATTGATGAATCAGACGATGAAGCTGATATTTTGCCCGGAAAGCACGAGCCTTTTCAGGAAAATTTTGAGAGGGTAGTCAGAAGTGATACGAAAGAAAATTGTTGTCAAGCCTGTGGTGAAGATGGAGATCTTTTGAACTGTGAAACATGCACTTATGCCTACCATTCTAGGTGTTTACTTCCACCACTTAGAGCTCCCACTCCAGGCAATTGGAGGTGTCCTGAATGTGTTAGCCCACTTAATGATATTGATAAAATATTAGACTGTGAGATGCGCCCTACTGTAGCTGATGACAGCGATACCACAAAACTGGGGTCAAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATATCTCCATTGCACTTGGGTGCCAGAAAAGGAGTTTCTGAAAGCTTACAAGATACATCCTCGCCTGAAGACAAAAGTAAATAACTTCCATCGTCAAATGTCATCAGTTAATACTTCTGATGAAGACTTTGTTGCCATTCGACCTGAATGGACCACTATTGATCGGATTATTGCTTGCAGGGGTGATGATGATAAGGAGTATCTTGTGAAATGGAGAGAGCTTTCATATGATGAATGCTATTGGGAGTTTGAGTCTGATATTTCTGAATTTCAGGCAGAAATTGATCGATTCAACAGATTTCAGTCTAGGTCTAGGAAACTTGTTTCTAATAAGTATTCATCATATCAACAGAAGGAATTTCATCAGTATGAACGTAGCCCTGAATTTCTTTCAGGGGGTACACTACATCCATATCAGCTTGAAGGCTTAAACTTTTTACGTTTCTCATGGTCGAAGCAAACTCATGTTATACTTGCCGATGAAATGGGACTTGGCAAAACCATACAGAGTATTGCTTTCTTGGCATCACTTTTTGAAGAGAACATTTCTCCACATTTGGTGGTTGCTCCACTTTCAACACTGCGAAATTGGGAACGTGAATTTGCGACATGGGCACCACAAATGAATGTTGTCATGTATGTTGGATCTTCTCAAGCCCGTGCTGTTATACGTGAGTATGAATTTTACTTTCCAAAGAGTCAGAAGAAGTTAAAAAAAAAGAAATCTGGTCTAATAGTAAGCGAAAGCAAACAAGATAGGATCAAATTTGATGTCCTCTTGACATCATATGAGATGATCAACCTTGACACAGCATCATTGAAGCCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTAAAGCAATATTCTAGCAGACATCGTGTGCTTTTGACTGGAACTCCTCTGCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAATTTCAGGAAGAGTTCAAGGATATCAATCAAGAGGAGCAGATTTTAAGGCTTCACAAAATGTTGGCCCCGCATCTTCTTAGAAGGGTCAAGAAAGACGTCATGAAGGAATTACCTCCTAAGAAGGAACTTATTTTACGTGTTGATCTAAGCAGTGAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGAGCTCAGATTTCTCTTATCAATGTTGTTATGGAGTTGCGAAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTCAAGATGCAAAAGAATCTCACAAAAAGCTGCTGGAATCATCGGGTAAGTTGCAATTGTTAGACAAAATGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGGGCTGAAAGACAAATACGGATAGATCGGTTTAATGCCAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGAGGATTGGGGATAAACCTTGCAACAGCGGACACAGTCATTATATATGATAGTGATTGGAACCCTCATGCTGATCTACAAGCTATGGCTAGGGCTCATCGACTTGGACAAACTAATAAGGTAATGATTTATAGGCTTGTGACACGGGGAAGCATTGAAGAAAGAATGATGCAGATGACTAAGAAAAAAATGGTGCTAGAACATCTTGTTGTAGGAAGGCTAAAATCTCAAAATATTAACCAGGAGGAGTTGAATGATATTATAAGGTATGGCTCCAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGAAAATCACGCCAAATTCATTATGATGATGCTGCCATAGATAGGTTGCTGGACCGTGAACAAGTTGGTGATGAAGAGGCTACAATGGATGATGACGAGGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGACGAAGTTGAGGCTGCAGCTGAGGAGGCAGAAAAAAAGAGAGCAATGGAGAATGAATCTGCTGTGGCAAGTACAGAAAGAGCAAAATACTGGGAGGAGTTGTTAGGAGACAGATATGAAGTTCACAAAGTTCAAGAGTTGGATGCCTTGGGCAAAGGGAAGCGGAGTCGTCACAAGCAGATGGTCTCTGTTGAAGATGATGATCTCGCTGGTCTGGAAGATGTAAGCTCTGATGGTGATGACAATGTTGATGCGGAACTTACTGACGGCGATTCAAATTCAAATGGAACTATTTCTAAAAGACCTTATAAAAGGAGAGCCCGTGATAGCACAGAGCCACATCCTCTGATGGAAGGTGAAGGAAAATCATTTCGAGTGCTTGGATTTAATCAGAATCAGAGAGCCGCATTTGTGCAAATTCTGATGAGGTTTGGGATGGGTGATTATGATTGGAAGGAGTTCACTTCTCGAATGAAACAGAAGACTTGTGAAGAAATCAAAGACTACGGAATTCTTTTCCTAAATCATATTATTGAAGATATAACCGATGCCTCTACATTCTCAGATGGTGTTCCAAAAGAAGGGCTTAGAATTCAAGATGTGCTTGTGAGGATTGCAATTCTGGGCTTGATAAGGGAAAAAGTGAAGTTTGCATCACAAAATCCTGGGACTCCACTTTTTTCAGATGAAATCTCATTTCGCTATCCCAGTTTGAAGGGTGCAAAGTTTTGGAAGGAGCAGCATGATTTAGTGCTGCTGCGTGCTGTATTGAAGCACGGATATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTTATGATATCATCTGTCAGGAGCTGAACCTTCCCCTGATAAATTTACCGGTACCGGGACAAGTAGGTTCTCAGGCACAAAATAGTGCAAATTTGTCCAACGCAGAAGCAGTTAGCAAGCAATCTCAGGAAAATGATGGCAGTGACAAAGCAGCTGATGGTGTACTTGGTTCTAGTGATGCTAGGAGCCAAACCGTTTTATATCAAGAGTCCTCCATGTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTGCTTCTCTTGGAAAAAGGAATCAATGCAGAGTACCAGAAAGAATGCTTAGGTGAAGTAAAAGTAAATGAAGTAACAAACAATGGAGTTAATTGTCAACCCAAGGCTGCTAGTATGCCTAGTAATAAATCAGGGGAGACAGACACTCAAGTGTCTGATCAACTGCCTCAAATGGAAGCATTAGCTTCAGACAAGCTTTCTGTTGCTGATAGTGATCCAAATCGTTTGGAATTGATTCAGCTTTACAATGAGATGTGTAAAGTCGTGGATGAAAACTCCAATGCAAGAAAACCAGCCGAAGTTGACGTGAAGAACTTGCTGACAATAGAACCCATTTGTGAAGGCATCAACAGAATTCTAACACCCTTACAGCAAAGTCAATCTTCTGAAGAGAAACCATTATTGGTTCCAGAGAATAAATCAGAGGATTCGCCACAAAATGAAATTGTGGTTTCTCAAGACGGCAAACCTAAATCAGAAGGTGTTGAGACAACAGATGTGGAAATGGAATGTCAACTGACAAAAGAAAACAGCACGGGTCCTGTCGAAGAGAAGGAAACGCCAAGTCTTTTAGAAACAAGGGGAAGTGATATAGAAATGAAAGAAGCTGAGAATGATGCTGAGCTAAATGAAAAGGAAGAAAAATCTAACCCAAAGGTCAATACGTTGGATGATTAA 4386 0.4045 MVSPRLHISCRPPIFNLTLSLFRKIPGILPPRSGGDRHFLHTTIMSSLVERLRARTDRKPIYSIDESDDEADILPGKHEPFQENFERVVRSDTKENCCQACGEDGDLLNCETCTYAYHSRCLLPPLRAPTPGNWRCPECVSPLNDIDKILDCEMRPTVADDSDTTKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAYKIHPRLKTKVNNFHRQMSSVNTSDEDFVAIRPEWTTIDRIIACRGDDDKEYLVKWRELSYDECYWEFESDISEFQAEIDRFNRFQSRSRKLVSNKYSSYQQKEFHQYERSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAVIREYEFYFPKSQKKLKKKKSGLIVSESKQDRIKFDVLLTSYEMINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQILRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSEQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDAKESHKKLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRLKSQNINQEELNDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQVGDEEATMDDDEDGFLKAFKVANFEYIDEVEAAAEEAEKKRAMENESAVASTERAKYWEELLGDRYEVHKVQELDALGKGKRSRHKQMVSVEDDDLAGLEDVSSDGDDNVDAELTDGDSNSNGTISKRPYKRRARDSTEPHPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGMGDYDWKEFTSRMKQKTCEEIKDYGILFLNHIIEDITDASTFSDGVPKEGLRIQDVLVRIAILGLIREKVKFASQNPGTPLFSDEISFRYPSLKGAKFWKEQHDLVLLRAVLKHGYGRWQAIVDDKDLKIYDIICQELNLPLINLPVPGQVGSQAQNSANLSNAEAVSKQSQENDGSDKAADGVLGSSDARSQTVLYQESSMLYHFRDMQRRQVEFIKKRVLLLEKGINAEYQKECLGEVKVNEVTNNGVNCQPKAASMPSNKSGETDTQVSDQLPQMEALASDKLSVADSDPNRLELIQLYNEMCKVVDENSNARKPAEVDVKNLLTIEPICEGINRILTPLQQSQSSEEKPLLVPENKSEDSPQNEIVVSQDGKPKSEGVETTDVEMECQLTKENSTGPVEEKETPSLLETRGSDIEMKEAENDAELNEKEEKSNPKVNTLDD 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0770 1461 SMART PHD_3 97 140 IPR001965 -
Mibi05g0770 1461 Gene3D - 142 239 - -
Mibi05g0770 1461 SMART helicmild6 672 756 IPR001650 -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 923 990 - -
Mibi05g0770 1461 SUPERFAMILY Chromo domain-like 110 221 IPR016197 -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 938 958 - -
Mibi05g0770 1461 Pfam SNF2-related domain 340 620 IPR000330 GO:0005524|GO:0140658
Mibi05g0770 1461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 553 IPR027417 -
Mibi05g0770 1461 Coils Coil 523 543 - -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 1269 1288 - -
Mibi05g0770 1461 SUPERFAMILY Chromo domain-like 219 285 IPR016197 -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 1170 1190 - -
Mibi05g0770 1461 ProSiteProfiles Chromo and chromo shadow domain profile. 144 226 IPR000953 -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 1359 1389 - -
Mibi05g0770 1461 Pfam Helicase conserved C-terminal domain 643 756 IPR001650 -
Mibi05g0770 1461 SMART DUF1086_2 948 1103 IPR009462 GO:0003677|GO:0006338
Mibi05g0770 1461 CDD SF2_C_SNF 641 767 - -
Mibi05g0770 1461 Pfam PHD-finger 98 140 IPR019787 -
Mibi05g0770 1461 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 518 IPR014001 -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 1415 1461 - -
Mibi05g0770 1461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 141 IPR013083 -
Mibi05g0770 1461 SMART ultradead3 316 529 IPR014001 -
Mibi05g0770 1461 Coils Coil 871 891 - -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 1170 1201 - -
Mibi05g0770 1461 Pfam CHD subfamily II, DUF1087 877 939 IPR009463 -
Mibi05g0770 1461 ProSiteProfiles Chromo and chromo shadow domain profile. 236 284 IPR000953 -
Mibi05g0770 1461 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 97 1416 - -
Mibi05g0770 1461 CDD CD1_tandem 142 216 - -
Mibi05g0770 1461 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 805 IPR001650 -
Mibi05g0770 1461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 813 IPR027417 -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 973 990 - -
Mibi05g0770 1461 ProSitePatterns Zinc finger PHD-type signature. 98 139 IPR019786 -
Mibi05g0770 1461 Gene3D - 1070 1236 - -
Mibi05g0770 1461 Pfam CHD subfamily II, SANT-like domain 970 1100 IPR009462 GO:0003677|GO:0006338
Mibi05g0770 1461 Gene3D - 240 284 - -
Mibi05g0770 1461 Gene3D - 563 787 IPR027417 -
Mibi05g0770 1461 SMART DUF1087_2 876 942 IPR009463 -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 923 937 - -
Mibi05g0770 1461 Pfam Chromo (CHRromatin Organisation MOdifier) domain 237 284 IPR023780 -
Mibi05g0770 1461 Pfam Chromo (CHRromatin Organisation MOdifier) domain 160 200 IPR023780 -
Mibi05g0770 1461 Gene3D - 312 562 IPR038718 -
Mibi05g0770 1461 MobiDBLite consensus disorder prediction 1359 1461 - -
Mibi05g0770 1461 SMART chromo_7 234 287 IPR000953 -
Mibi05g0770 1461 SMART chromo_7 143 212 IPR000953 -
Mibi05g0770 1461 CDD CD2_tandem 234 284 - -
Mibi05g0770 1461 ProSiteProfiles Zinc finger PHD-type profile. 95 142 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0770 Mibi-ChrMibi05 7188827 7204591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0770 342 783 RAD5 or RAD16-like Gene Family AT1G02670 22.481 3.71e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi05g0770 SNF2_N 2.4e-65 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1905 08 35965219 35989221 Mibi05g0770 05 7188827 7204591 CCT