Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0757 ATGGCCTCCCACAATAGTCAACAACACCATTTCTCCGACTCCGATCAACCCAGTTCCAATTCCCTCCTCCTCCATCATTCCCACTTTTCCAACAGCAACAATTTCCTCCTCGACGGCGCCGACCACCCCAGTAATGCCAAGACCGAGGTTGTTGTGGACGACGGCGATGATGACGACAGGCTTCTGAAGTGGGAGAATGCGAGGTCCAAGGCTGAGATTCTAGCTCACCCTCTCTACGAACAGCTCCTGTCGGCACACGTGGCGTGTTTGCGGATCGCCACGCCTGTCGACCAGTTGCCCAGGATTGATGCTCAGCTTGCTCAGTCCGAGAATGTGGTCGCCAAGTACTCAGCTTTGGGGCATGGAGCTCATAACATGGTTTCTGATGAGAAGGGGCTCGATCAATTCATGTCGCATTATGTTCTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTTCATGCAATGGAAGCAGTCATGGCATGTTGGGAGATAGAACAATCCTTACAAAGTTTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCTACCATGTCTGATGATGAAGAAGACCAAATAAACAGTGATGGCAATCTTTTCGATGGTGCTTTTGATGGTTCAGACAGCATGGGATTTGGCCCTCTTGTTCCCACAGAGAATGAGAGATCCCTCATGGAGAGAGTTAGGCAAGAGTTGAGACATGAACTGAAACAGGGCTATAAGGATAAAATTGTGGACATAAGAGAAGAAATTTTGCGCAAGAGACGAGCTGGGAAACTTCCTGGCGATACCACCTCTGTCCTTAAAGCTTGGTGGCAAGCCCATTCCAAGTGGCCTTACCCTACTGAGGAAGATAAGGCGAAGTTGGTACAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTCATCAATCAGAGGAAGAGGAACTGGCACAGCAATGCTTCAACTTCCACTGTCTCGAAGAGCAAGCGGAAAAGGTGA 999 0.4865 MASHNSQQHHFSDSDQPSSNSLLLHHSHFSNSNNFLLDGADHPSNAKTEVVVDDGDDDDRLLKWENARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSENVVAKYSALGHGAHNMVSDEKGLDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQINSDGNLFDGAFDGSDSMGFGPLVPTENERSLMERVRQELRHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQAHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHSNASTSTVSKSKRKR 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0757 332 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
Mibi05g0757 332 SMART ELK_2 235 256 IPR005539 GO:0003677
Mibi05g0757 332 SMART HOX_1 257 322 IPR001356 GO:0003677
Mibi05g0757 332 SMART KNOX2_2 122 178 IPR005541 GO:0003677|GO:0005634
Mibi05g0757 332 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677
Mibi05g0757 332 Pfam ELK domain 235 256 IPR005539 GO:0003677
Mibi05g0757 332 Gene3D - 254 330 - -
Mibi05g0757 332 CDD homeodomain 258 319 IPR001356 GO:0003677
Mibi05g0757 332 Pfam KNOX1 domain 70 110 IPR005540 GO:0003677|GO:0005634
Mibi05g0757 332 MobiDBLite consensus disorder prediction 1 24 - -
Mibi05g0757 332 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 21 318 - -
Mibi05g0757 332 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677|GO:0006355
Mibi05g0757 332 ProSiteProfiles ELK domain profile. 235 255 IPR005539 GO:0003677
Mibi05g0757 332 Pfam KNOX2 domain 127 177 IPR005541 GO:0003677|GO:0005634
Mibi05g0757 332 FunFam homeobox protein knotted-1-like 3 isoform X1 256 317 - -
Mibi05g0757 332 SUPERFAMILY Homeodomain-like 257 320 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0757 Mibi-ChrMibi05 7066325 7068859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0757 59 332 Homeobox Transcription Factor Family AT5G25220 85.036 4.46e-176 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mibi05g0757 KNOX2 2.3e-19 No_clan