Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0720 ATGTTTTGGAGGCTGAGTATACCAGAAGGGTTGGATAGGGATTATTATGGGTGTAATTTTGAGAAATTGGAGGTGTGTGAGAGTGTGTGGGGTGAATTCCCTGCGCTAACAAATTTCATTTGCAGACTCTTCCATCTCCAATCTACTCTTCTCATTCAACTCTTCGCGCAGAATATGGGAGAAACCAAGGATGAAGGATACGAGGAAGAGCTCCTTGACTACGAAGAGGAAGAAGACAAAGCCCCTGATTCCGTTGGAGCCAAAGCCAATGGTGAAGCTGGAAAGAAGGGCTACGTTGGGATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGTGCCATTGTAGACTCTGGATTTGAGCATCCTTCTGAAGTACAACATGAATGCATTCCTCAAGCAATCCTGGGCATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCCGTCTTTGTTCTCTCGACCTTGCAGCAGATTGATCCCGTTGCAGGCCAAGTTGCTGCCCTTGTTCTATGTCATACAAGGGAATTGGCATACCAGATATGCCATGAGTTCGAGAGGTTCAGTACCTACTTGCCTGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCTGGAAGAATACTTGCATTGGCTAGGGATAAGGATCTTTCATTAAAGAATGTCAGGCATTTTATTTTGGATGAGTGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATCTTCAAGATGACTCCTCATGATAAGCAAGTGATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTCGATGACGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTCAACCAAGTTGTTATCTTTGTGAAGAGTGTCAGTAGAGCAGCTGAGCTTGACAGACTACTCGTGGAGTGCAACTTCCCGTCTATATGCATCCATTCTGGCATGTCACAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTTAAGGAGGGTCATAGCAGGATTCTTGTGGCAACAGACTTGGTTGGGAGAGGGATTGACATTGAACGAGTGAACATTGTAATAAACTATGACATGCCTGATTCTGCAGACACCTACTTACACAGGGTTGGCAGAGCTGGAAGGTTTGGCACCAAAGGTCTTGCAATTACATTTGTTTCATGTGCTGCAGATGTTGATGTTCTTAACAATGTTCAGTCAAGATTCGAAGTTGATATAAAGCAGCTCCCAGAGCAGATTGATATATCTACATACATGCCATCATAG 1458 0.4335 MFWRLSIPEGLDRDYYGCNFEKLEVCESVWGEFPALTNFICRLFHLQSTLLIQLFAQNMGETKDEGYEEELLDYEEEEDKAPDSVGAKANGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLVECNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDISTYMPS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0720 485 Gene3D - 317 484 IPR027417 -
Mibi05g0720 485 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 132 IPR014014 GO:0003724
Mibi05g0720 485 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 481 IPR001650 -
Mibi05g0720 485 SMART helicmild6 360 441 IPR001650 -
Mibi05g0720 485 CDD SF2_C_DEAD 321 450 - -
Mibi05g0720 485 Gene3D - 100 316 IPR027417 -
Mibi05g0720 485 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 102 459 - -
Mibi05g0720 485 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 308 IPR014001 -
Mibi05g0720 485 Pfam Helicase conserved C-terminal domain 334 441 IPR001650 -
Mibi05g0720 485 FunFam DEAD-box ATP-dependent RNA helicase 56-like 92 310 - -
Mibi05g0720 485 CDD DEADc_DDX39 103 310 - -
Mibi05g0720 485 SMART ultradead3 123 324 IPR014001 -
Mibi05g0720 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 452 IPR027417 -
Mibi05g0720 485 FunFam DEAD-box ATP-dependent RNA helicase 317 485 - -
Mibi05g0720 485 Pfam DEAD/DEAH box helicase 129 294 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0720 Mibi-ChrMibi05 6802252 6808612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0720 59 485 Eukaryotic Initiation Factors Gene Family AT5G11200 82.942 0.0 751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1960 08 36587027 36592819 Mibi05g0720 05 6802252 6808612 CCT
Mibi05g0720 05 6802252 6808612 Mibi05g0720 05 6802252 6808612 ECH
Mibi05g0720 05 6802252 6808612 Mibi08g1960 08 36587027 36592819 ECH