Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0693 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTATATCCATGATTACCTAGTTAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCTTCTGATCCCGTTGCTATTGATGCCCCTGGAGGATTTCTGTTCGAGTGGTGGTCGGTGTTCTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCAGAAGTTGCGGCATCTTACATTGAGACACAGTTAATTAAGGTAAGGGAACAGCAGCAGCAGCAGCAGCCACAGCCGCAGTCCCAGCAATCACAACATCATCAGCAGCAGCAGATGCAGATGCAGCAATTCCTATTACAGCAGCGGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCCATCACAACCTCCGCAACAGCAGCCACCACCTCCACAACAGCAGCAGAGAAGGGATGGTGCTCATCTCCTAAATGGAAGTGCAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCCATGGCAACAAAGATGTATGAAGAGAGGTTAAAACCTCCCCTTCAGAGGGATTCTTTGGATGATGCAGCCATGAAGCAAAGATTTGGTGACAACATGGGCCAACTCTTGGACCCTAATCATATAATGAAGCCAGCTGCAGCTTCTGGCCAGTCTTCGGGACAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCAAATTCATGCTCGTAGTCAGCAATTGCCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTGAATTCAAGAGCTGCTGGTCCTGAAGGATCTTTAATGGGAATTCCTGGATCAAATCAAGGCAGCAACAATTTGACTCTGAAGGGATGGCCACTCACAGACTTGGAACAACTGCGCTCTGGTATTCTTCATCAACAAAAGTCTTTTATACAGGCTCCTCAACCTCTTCATCAATTACAAATGTTGTCACCTCACCAACAGCAGCTTATGCTTAGTGCGCAGCAAAATTTGTCATCCCCATCTGCCAGTGAGGAGAATAGAAAACTGAGAATGCTTCTGAGTCAAAGGAATACGGGCCTAAATAAGGACGGCCTTTCAAATCCTGTTGACATGGTCCCAAATGTTGGATCACCTCTTCAAGCTGGCGGCCCTCTTTTGCCTCGTGGGGATACAGATATGCTAATGAAGCAATTACAGCAACAACATCAACAGCAGCAGAGCAACAATCCACAGCAGCAGCAACTTCAACAGCATGTTCTATCAAATCAGCAGCCTCAGATTTCAAACCATAATATGCATCAACTAGATAAAGTGGGGGGTGGTGGCAGTGTCACCATGGATGGCAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCTAAAAACCAGTCTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCAAACAGTTCTGGAACAGCAAATACCGCAGGTCCATCACCAAGTTCTGCACCCTCAACTCCCTCAACTCATACACCTGGAGATGTGATATCAATGCCAGCTTTGCCTCATAGTGGCAGTTCATCAAAGCCTTTAATGATGTTTAGCACTGATGGTACTGGAACTCTAACATCGCCTTCAAACCAGTTGGTTGATATGGATCGTTTTGTGGAGGATGGATCACTTGATGACAATGTCGAGTCCTTTTTATCACATGATGATACAGACCCTAGAGATGCTGTTGGTCGTTGTATGGATGTAAGCAAAGGCGCCTTTTCATTTTCTGAGGTGAATTCTGTACAAGCAAGCGCAAGTAAAGTTGTTTGCTGCCACTTTTCATCTGATGGGAAGTTGCTTGCGAGTGGTGGTCATGACAAGAAGGCTGTGTTATGGCACACAGATTCCCTAAAGCAAAAGGCTACTCTGGAAGAACATTCATCTATGATCACTGATGTCCGTTTCAGTCCAAGCATGTCTCGTCTTGCAACATCTTCTTTTGATAAAACTGTCAGGGTTTGGGATGTCGACAATCCTGGATATACAATTCGCACCTTTACCGGACATACTACGTCTGTCATGTCATTAGATTTTCACCCAAATAAGGATGATCTGATCTGCTCATGTGATGGTGATGGTGAGATACGATATTGGAGTATAACCAATGGTAGCTGTGCTAGAGTCTCGAAGGGTGGCACTGCCCAGATGAGATTTCAACCCCGTATGGGGAGATACCTTGCTGCAGCAGCAGAAAATGTTGTCTCTGTACTTGATGTGGAGGCACAAGCTTGCAGATACTCATTACAGGGACATACAAAGGCGGTACATTCTGTCTGCTGGAACCCTACTGGGGAATTATTGGCATCTGTGAGTGAGGACTCGGTCAGGGTTTGGACTCTTGGGGCTGGAAATGAAGGAGAATGTGTTCACGAGCTAAGCTGTAACGGCAATAAGTTCCACTCTTGTGTTTTCCATCCGACTTATTCTAATTTGCTGGTCATTGGCTGTTACCAGTCTTTGGAGCTTTGGAATATAGCGGAGAACAAGACAATGACTCTATCTGCTCATGAAGGCCTCATTGCTGCCTTGGCAGTGTCTCCAGTGACTGGTTTGGTCGCTTCAGCTAGTCATGACAAGTTCGTCAAGCTCTGGAAATAA 2625 0.4587 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKVREQQQQQQPQPQSQQSQHHQQQQMQMQQFLLQQRQQQQQQQQQQQQPSQPPQQQPPPPQQQQRRDGAHLLNGSANGLVGNPSTANAMATKMYEERLKPPLQRDSLDDAAMKQRFGDNMGQLLDPNHIMKPAAASGQSSGQVLHGAAGGMSQIHARSQQLPGSTPDIKSEINPVLNSRAAGPEGSLMGIPGSNQGSNNLTLKGWPLTDLEQLRSGILHQQKSFIQAPQPLHQLQMLSPHQQQLMLSAQQNLSSPSASEENRKLRMLLSQRNTGLNKDGLSNPVDMVPNVGSPLQAGGPLLPRGDTDMLMKQLQQQHQQQQSNNPQQQQLQQHVLSNQQPQISNHNMHQLDKVGGGGSVTMDGSMSNSFRGNDQVSKNQSGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLVDMDRFVEDGSLDDNVESFLSHDDTDPRDAVGRCMDVSKGAFSFSEVNSVQASASKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSMITDVRFSPSMSRLATSSFDKTVRVWDVDNPGYTIRTFTGHTTSVMSLDFHPNKDDLICSCDGDGEIRYWSITNGSCARVSKGGTAQMRFQPRMGRYLAAAAENVVSVLDVEAQACRYSLQGHTKAVHSVCWNPTGELLASVSEDSVRVWTLGAGNEGECVHELSCNGNKFHSCVFHPTYSNLLVIGCYQSLELWNIAENKTMTLSAHEGLIAALAVSPVTGLVASASHDKFVKLWK 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0693 874 CDD WD40 586 874 - -
Mibi05g0693 874 FunFam Transcriptional corepressor LEUNIG 718 874 - -
Mibi05g0693 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 675 717 IPR001680 GO:0005515
Mibi05g0693 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 842 874 IPR001680 GO:0005515
Mibi05g0693 874 SUPERFAMILY WD40 repeat-like 585 874 IPR036322 GO:0005515
Mibi05g0693 874 SMART WD40_4 625 664 IPR001680 GO:0005515
Mibi05g0693 874 SMART WD40_4 794 833 IPR001680 GO:0005515
Mibi05g0693 874 SMART WD40_4 668 708 IPR001680 GO:0005515
Mibi05g0693 874 SMART WD40_4 583 622 IPR001680 GO:0005515
Mibi05g0693 874 SMART WD40_4 750 788 IPR001680 GO:0005515
Mibi05g0693 874 SMART WD40_4 835 874 IPR001680 GO:0005515
Mibi05g0693 874 MobiDBLite consensus disorder prediction 395 522 - -
Mibi05g0693 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 631 IPR001680 GO:0005515
Mibi05g0693 874 Gene3D - 566 722 IPR015943 GO:0005515
Mibi05g0693 874 Gene3D - 723 874 IPR015943 GO:0005515
Mibi05g0693 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 632 667 IPR001680 GO:0005515
Mibi05g0693 874 Pfam LisH 10 36 IPR006594 GO:0005515
Mibi05g0693 874 ProSitePatterns Trp-Asp (WD) repeats signature. 651 665 IPR019775 -
Mibi05g0693 874 Pfam WD domain, G-beta repeat 595 621 IPR001680 GO:0005515
Mibi05g0693 874 Pfam WD domain, G-beta repeat 629 664 IPR001680 GO:0005515
Mibi05g0693 874 Pfam WD domain, G-beta repeat 837 874 IPR001680 GO:0005515
Mibi05g0693 874 Pfam WD domain, G-beta repeat 671 708 IPR001680 GO:0005515
Mibi05g0693 874 Pfam WD domain, G-beta repeat 753 787 IPR001680 GO:0005515
Mibi05g0693 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 757 789 IPR001680 GO:0005515
Mibi05g0693 874 SMART Lish 8 40 IPR006594 GO:0005515
Mibi05g0693 874 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 757 789 - -
Mibi05g0693 874 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 874 - -
Mibi05g0693 874 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 632 667 - -
Mibi05g0693 874 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Mibi05g0693 874 MobiDBLite consensus disorder prediction 89 150 - -
Mibi05g0693 874 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 675 713 - -
Mibi05g0693 874 Coils Coil 394 414 - -
Mibi05g0693 874 MobiDBLite consensus disorder prediction 395 432 - -
Mibi05g0693 874 MobiDBLite consensus disorder prediction 444 504 - -
Mibi05g0693 874 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 842 874 - -
Mibi05g0693 874 MobiDBLite consensus disorder prediction 89 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0693 Mibi-ChrMibi05 6565446 6574067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0693 635 834 Miscellaneous Gene Families AT5G08390 25.604 3.95e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mibi05g0693 WD40 0.018 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1993 08 37165834 37173787 Mibi05g0693 05 6565446 6574067 CCT
Mibi05g0693 05 6565446 6574067 Mibi05g0693 05 6565446 6574067 ECH