Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0679 ATGAACGTTCCCTCACAAAAATCATATCTTGAAGGTTTATACGACACTTGCCCGTTGTCGATGGAGAATTCTGGGCCTGTGAACGACACTCAGTTCATTATTGACATTGCTGGGAGTAGTGAAGCTTCCACATCTACCTCTCCACATGATGGAAATTTTAATGATGGAGGTAGTACATCACAACATGAAGACAGACCTAGTAGTGCAATATTACCTGCTTCTCTGCCTTCAGTTTCTGTTGCATCTAATGGTACAAATTCTAGGATTTCTTCAGTTGTTAGACGAGGGGACACCCGTCGTCATAGGAGTCCATTGAATTCAGGGTTATGGATATCTGTTGAGCTAGTGCTCACGATTAGCCAGATTGTTGCATCTATTATTGTTTTATCTTTGTCAAGGCATGAACATCCACGCACTCCATTGTTCGCATGGATTGTTGGTTATGCATCCGGATGTGTTGCTATTATCCCCTTGCTTGGTTGGAGGTATTATCATCATAACCAGAGTAGAGAAAGAAATTCATCTCAACCACGTCTAGCTTCCCCTCGAGTTAATGTTTCTTCAAGGACACTTCTTTCTGTTTCAAGAACTAATGGGGGAGAAGACAATCGGGCTGTTGTTTCATCCTCTAGAGGCAGTCTAGTTTCAGTAATGATGAATCCAAGACTAAAGTCACTGGTGGAATATTTCAAAATGGGCTTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGCAATGTGTGGATCTTTGGGGGGAACTCATCTGCTGATGATGCTCCTAATATGTACAGGTTATGTATTGTGTTTCTGACATTCAGCTGTATTGGCTATGCTATGCCCTTCATTCTATGTGCAACAATCTGCTGTTGTCTACCTTGTATAATTTCCATTCTTGGGGTTAGAGAGGACCTGACACAAACAAGAGGGGCAACCTCTGAATCTATTAATGCCCTGCCAACATACAAGTTCAAGATGAAGAAACGTAAAAACAATGATAAAACTAGTGATGAAAGCCACTCAAATGTTTTTGAAGGTGGAATGGTGGCTGCTGGAACTGAAAAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCGAAGTATGAAAATAACGATGAACTGAGAGAGTTGCCATGTTCCCATCTTTTTCACAAAGACTGTGTGGACAAGTGGCTGAAGATTAATGCATTGTGCCCTCTTTGCAAAAGTGAGGTTGGTGGGAATCTAATAGGTTCAGTTTCTGGTGAAGGTTCCAACCAACCAATGGGTGAGAGCAGAGTTGGAGTTAGTCCAATCAATACCATAGTATAA 1323 0.4195 MNVPSQKSYLEGLYDTCPLSMENSGPVNDTQFIIDIAGSSEASTSTSPHDGNFNDGGSTSQHEDRPSSAILPASLPSVSVASNGTNSRISSVVRRGDTRRHRSPLNSGLWISVELVLTISQIVASIIVLSLSRHEHPRTPLFAWIVGYASGCVAIIPLLGWRYYHHNQSRERNSSQPRLASPRVNVSSRTLLSVSRTNGGEDNRAVVSSSRGSLVSVMMNPRLKSLVEYFKMGLDCFFAVWFVVGNVWIFGGNSSADDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINALPTYKFKMKKRKNNDKTSDESHSNVFEGGMVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGGNLIGSVSGEGSNQPMGESRVGVSPINTIV 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0679 440 CDD RING-H2_RNF111_like 364 406 - -
Mibi05g0679 440 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 27 409 - -
Mibi05g0679 440 SUPERFAMILY RING/U-box 356 409 - -
Mibi05g0679 440 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Mibi05g0679 440 MobiDBLite consensus disorder prediction 40 68 - -
Mibi05g0679 440 SMART ring_2 365 405 IPR001841 -
Mibi05g0679 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 411 IPR013083 -
Mibi05g0679 440 FunFam E3 ubiquitin-protein ligase 348 413 - -
Mibi05g0679 440 Pfam Ring finger domain 365 406 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0679 Mibi-ChrMibi05 6405792 6407984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0679 58 410 C3H Transcription Factor Family AT1G80400 55.587 4.91e-141 407