Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0650 ATGTTTTTCTTAAAGATGGCCGGTGTTCCTGGGGTGACAGAAGCACTGTTCATGGCTAAACAATCGGCAGCTGCTAAAGAGAAAGATAAAAATGAAACTTCTCTGCTCTATAGTTGTGGCCTTTGTGGGAAAAGTTACAAAAGTTCTAAGGCTCATGCTGAGCATCTGAAATCGCGTGGTCATTTGATGCGTGCATCTCAAGGAAGTAGTGATTCAGCTGACAAAGCAATAGTTAAGCCACTATCACAACGTGTAGTAAATAGACCTCCTCCCGTAAGAAATGTAGACAACGATGTTGAAAGTGAATATGAATGGGAGGATGTCGATTCTGATTTTGAGGATCCTTTGATTAATGATGCTTCAACCTCCATGACTGCTTTGAATGTGAATGAGCATGATGATAAGAAGGAAGATGAAGACGATGATTTTGGGGATTTGGATCCATCATGCTGTTTTATGTGTGATCGAAAGCATCAAACTATAGAAAGATGCATTGTTCACCTGCACAAGCAGCATGGATTGTTCATTCCAGATGCTGAGTATTTAAAGGATCCTGAAGGCCTTCTTACCTATCTAGGCCTTAAGCTTGATTTCTATAACCTTTCCCCCTTGTTTATTTTCAAGGTCATGAAGGATTATACATGCCTTTACTGCAATGAGAGATGTCATCCTTTTGGCAGCCTGGAAGCAGTTAGGAAACACATGGCAGCCAAAAGTCACTGTAAAATGCATTATGGTGGTGGCGATGATGATGACGATGGGGATTTGGAAGATTTCTATGATTATAGCAGCAGTTATGTGGATGAGCAAGGGAATCAGCTAGTTGTATCAGGTGAGTCAGCCAACAATGTAGAACTTGGTACTGGTGGATCAGAGCTCATAATCACCAAGAAATCAAATGATGAAATAATATCAACTAAAATACTCGGTTGTCGTGAGTTTTTGCGTTATTATCGTCAAAAACCCCGCCCATCACCCACAAATCTCATGGTTGCTGTTGCTGCTGCAGCATTGGCTTCAAGATACAAGAGCATGGATTTGGCGGCTGTGCAATCAAGGGAGCGTTTGGTGAGGCTGAAAGTGCTGAAGGAAATGAATAGGTCTGGTGTAGAGACAATGCGTTCTAAAATAGCGATGAAAAGTAACGTCATCCGTAACTTGCCAAAGAACGTCCCATATTAG 1182 0.4162 MFFLKMAGVPGVTEALFMAKQSAAAKEKDKNETSLLYSCGLCGKSYKSSKAHAEHLKSRGHLMRASQGSSDSADKAIVKPLSQRVVNRPPPVRNVDNDVESEYEWEDVDSDFEDPLINDASTSMTALNVNEHDDKKEDEDDDFGDLDPSCCFMCDRKHQTIERCIVHLHKQHGLFIPDAEYLKDPEGLLTYLGLKLDFYNLSPLFIFKVMKDYTCLYCNERCHPFGSLEAVRKHMAAKSHCKMHYGGGDDDDDGDLEDFYDYSSSYVDEQGNQLVVSGESANNVELGTGGSELIITKKSNDEIISTKILGCREFLRYYRQKPRPSPTNLMVAVAAAALASRYKSMDLAAVQSRERLVRLKVLKEMNRSGVETMRSKIAMKSNVIRNLPKNVPY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0650 393 SUPERFAMILY beta-beta-alpha zinc fingers 137 194 IPR036236 -
Mibi05g0650 393 Pfam C2H2 type zinc-finger (2 copies) 151 265 IPR041661 -
Mibi05g0650 393 SMART c2h2final6 37 61 IPR013087 -
Mibi05g0650 393 SMART c2h2final6 213 240 IPR013087 -
Mibi05g0650 393 ProSitePatterns Zinc finger C2H2 type domain signature. 39 61 IPR013087 -
Mibi05g0650 393 PANTHER ZINC FINGER PROTEIN 622 5 392 IPR040025 -
Mibi05g0650 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0650 Mibi-ChrMibi05 6219870 6221542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0650 5 393 C2H2 Transcription Factor Family AT4G31420 57.323 7.39e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi05g0650 zf-C2H2_2 7.9e-22 CL0361