Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0649 ATGCCTGCTTTGACTTGTAATGCTTGCAACAAAGAATTCACCGACGATGCTGAGCAAAAGCTTCATTACAAATCCGACTGGCACCGATACAATCTCAAGCGCAAGGTGGCTGGTGTTCCCGGGGTGACAGAAGCACTGTTCATGGCTAAACAATCTGCAGCTGCTAAAGAGAAAGATAAAAATGAAACCCCCCTGCTGTATAGTTGTGGCCTTTGTGGAAAAAGTTATAAAAGTTCCAAGGCTCATGCTGAGCATCTGAAATCACGCGGTCATTTGATGCGGGCATCTCAAGGAAGTAGCGATTCAGATGACAAAGCAATAGTCAAGCCACTATCACGTGCAGTGAATAGACCTCCTCCCAGAAGAGAGGTAGAAAATGATGAAAGTGAAGGAAGTGAAGATGAATGGGAGGAGGTCGATTCTGATTCTGAGGATCCTTTGATTAATGATGCTTCAACCTCCATGACTGGTTTGAATGTGAATGAGCATGGTGATGATGTTGATATGGACAAAGATGACGACGACGATTATGGGGATTTGGATCCATCATGCTGTTTTATGTGTGATCGAAAGCATCGTAATATAGAAAGCTGCTTTGTTCACCTGCACAAACAGCATGGATTGTTCATTCCAGATGTTGAGTATTTAAAGGATCCTAAAGGCCTGCTTACCTATCTAGGCCTTAAGGTAATGAGGGATTATATGTGTCTTTACTGCAATGAGAGATGCCATCCTTTCGACAGCCTGGAGGCAGTTAGGAAACACATGGCAGCCAAAAGTCACTGTAAAGTGCATTATGGTGGTGGCGATGATGATGAGGAAGGGGAGTTGGAAGATTTCTATGATTATAGCAGCAGTTATGTGGATGAGCAAGGGAATCAACTAGTTGCATCAGGTGAGTCAGCCAACAATGTAGAACTTGGCAGTGGTGGATCAGAGCTCATAATCACCAAGAAATCAAATGATGGAATATCAACTAAAACACTTGGTTCTCGTGAATTTTTGCGTTATTATCGTCAGAAACCCCGCCCATCACCCACAAATAGCATGGCTGTTACTGCTGCATTGGCTTCAAGGTACAGGAGTATGGGTTTGGCAACTGTGCAAACAAGGGAGCATCTGGTGAGGCTGAAAGTGCTGAAGGAAATGAATAGGTCTGGTGTAGAGACAATGCGTTCTAAAATAGCGATGAAAAGTAACGTCATCCGAAACTTGCCAAAGAACGTCCCATATTAG 1236 0.4369 MPALTCNACNKEFTDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFMAKQSAAAKEKDKNETPLLYSCGLCGKSYKSSKAHAEHLKSRGHLMRASQGSSDSDDKAIVKPLSRAVNRPPPRREVENDESEGSEDEWEEVDSDSEDPLINDASTSMTGLNVNEHGDDVDMDKDDDDDYGDLDPSCCFMCDRKHRNIESCFVHLHKQHGLFIPDVEYLKDPKGLLTYLGLKVMRDYMCLYCNERCHPFDSLEAVRKHMAAKSHCKVHYGGGDDDEEGELEDFYDYSSSYVDEQGNQLVASGESANNVELGSGGSELIITKKSNDGISTKTLGSREFLRYYRQKPRPSPTNSMAVTAALASRYRSMGLATVQTREHLVRLKVLKEMNRSGVETMRSKIAMKSNVIRNLPKNVPY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0649 411 ProSitePatterns Zinc finger C2H2 type domain signature. 69 91 IPR013087 -
Mibi05g0649 411 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Mibi05g0649 411 SMART c2h2final6 4 28 IPR013087 -
Mibi05g0649 411 SMART c2h2final6 234 261 IPR013087 -
Mibi05g0649 411 SMART c2h2final6 67 91 IPR013087 -
Mibi05g0649 411 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Mibi05g0649 411 PANTHER ZINC FINGER PROTEIN 622 3 410 IPR040025 -
Mibi05g0649 411 SUPERFAMILY beta-beta-alpha zinc fingers 170 247 IPR036236 -
Mibi05g0649 411 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Mibi05g0649 411 Gene3D Classic Zinc Finger 4 91 - -
Mibi05g0649 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 96 IPR013087 -
Mibi05g0649 411 SUPERFAMILY beta-beta-alpha zinc fingers 66 97 IPR036236 -
Mibi05g0649 411 MobiDBLite consensus disorder prediction 128 145 - -
Mibi05g0649 411 MobiDBLite consensus disorder prediction 146 160 - -
Mibi05g0649 411 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Mibi05g0649 411 MobiDBLite consensus disorder prediction 83 173 - -
Mibi05g0649 411 MobiDBLite consensus disorder prediction 106 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0649 Mibi-ChrMibi05 6210824 6213569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0649 1 411 C2H2 Transcription Factor Family AT4G31420 64.096 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi05g0649 zf-C2H2_2 1.8e-24 CL0361