Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0640 ATGGCCCAATCTCATGTTGTCAGAAGTGCTACTAATACTAAGGATCAAAGTGTTCAGTTATGTAGCCGACCTAATTGCAGTAGCAAGATATACTCTTCTTTAGTTGCTGAGAATGGTTCCTGTATGAAAGGTAAATCATTGAGACCTTTAACACAATCCTCTTTAAGTGGCAAGGAAGCAGTTGGAAGATCCTCTGGAACTTTATCAGGAACTAGTAAATTAAAGAAGTCCCTTAAAGAGCCTCGGCGAACGCTATCCTCTAAGTTAGAGACAGATTCATCTGAAACTAGCAGCATACAGGATGAACCTGAAGTTTCAGTTTGCATTCCTCCACCTGCAACTCTTCAAAGTCAGCTTCATGCTGAACAAGGACATGGAGAACCTGGTAAGGTGATGCTGATGGAAGCAGCAAGCACTAGCGTCATTTTAAAAACAAGATCACGGAGGAATTTCCATCAACCTGGATCACATGGTCAAGAAACTAAAAGCATTGGCTCAGCGACAAGTGCTGGTACCAGCCGATATAATTTGAGGAATGTCAAGTGCAACTCAATAAGTGATGTCAGCTCCACAGATTGCTCTTCATCAGATTCAACCATGGATAGACGGAATGATATGGTGAAGAGAAGAAATTGTGTAAAGGAAAGTAGTTCCACTGCCAGAGGGAAGAAGTTGAGTGGGACTTCATTGGAAGGACAGAGCTCTGGTTCTGGAAGTGGCATATCTATTTCTGATCCAAGAAGATCAAGACATATTCATCCTCAAAGGGACAACACTACAGGAGTTAGAACCCGAAGGGCAATGACTGGTAATGCAAGGGAAAGGCTTCCAAGGTCAAGCCCCGGAGATGCACACCCTATGCAGCCCAATGAATCCCCTGCAATGACTTCTTTAATTCGAGTAAGCTGCCTTAGTAGACCAGGTTCAAGCAACGGGCGGCCTGCATCTTCAGAATCTGACACTACCCGTCCCCTAATAAGTTGGAGTAGAAGAAGGCACCAAAATAATATTGCTCAGGTATTATTAGCACTTGAGATGATTGAACAAGATGAAGAGCTGACAGAGGAGGAAATTCATTTGCTAGAGACTAATTTCCTCCACGATGGAATATATTCATATGATCAGCACAGAAACATGCGTATGGATATTGATAATATGTCATATGAGGAACTATTAGCCCTGGAAGAAAGGATGGGTACTGTGAGCACAGCTTTACCAGAGGAAGCACTGTCAGAATGTCTTAAGAGAAGCATCTATCAGTCTAGACCATCAGATAATTACACGGAGAGTAGCAATACTAACGATGATACCAAATGCAGCATCTGCCAGGATGAATATTTGGTTGGGGATGAATTGGGGAGTCTGAAGTGTGAGCATGGATATCATGTGGATTGCATACAACAATGGCTTCGCCTCAAGAATTGGTGCCCTATCTGCAAAGCATCAGCTGCATCTTCAGATTCATCTGATACCTCTAATCAGGCCTGA 1488 0.4301 MAQSHVVRSATNTKDQSVQLCSRPNCSSKIYSSLVAENGSCMKGKSLRPLTQSSLSGKEAVGRSSGTLSGTSKLKKSLKEPRRTLSSKLETDSSETSSIQDEPEVSVCIPPPATLQSQLHAEQGHGEPGKVMLMEAASTSVILKTRSRRNFHQPGSHGQETKSIGSATSAGTSRYNLRNVKCNSISDVSSTDCSSSDSTMDRRNDMVKRRNCVKESSSTARGKKLSGTSLEGQSSGSGSGISISDPRRSRHIHPQRDNTTGVRTRRAMTGNARERLPRSSPGDAHPMQPNESPAMTSLIRVSCLSRPGSSNGRPASSESDTTRPLISWSRRRHQNNIAQVLLALEMIEQDEELTEEEIHLLETNFLHDGIYSYDQHRNMRMDIDNMSYEELLALEERMGTVSTALPEEALSECLKRSIYQSRPSDNYTESSNTNDDTKCSICQDEYLVGDELGSLKCEHGYHVDCIQQWLRLKNWCPICKASAASSDSSDTSNQA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0640 495 MobiDBLite consensus disorder prediction 52 110 - -
Mibi05g0640 495 FunFam E3 ubiquitin-protein ligase arkadia 402 485 - -
Mibi05g0640 495 SMART ring_2 439 479 IPR001841 -
Mibi05g0640 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 489 IPR013083 -
Mibi05g0640 495 MobiDBLite consensus disorder prediction 186 292 - -
Mibi05g0640 495 MobiDBLite consensus disorder prediction 150 170 - -
Mibi05g0640 495 ProSiteProfiles Zinc finger RING-type profile. 439 480 IPR001841 -
Mibi05g0640 495 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 57 485 IPR045191 GO:0061630
Mibi05g0640 495 Pfam Ring finger domain 438 480 IPR001841 -
Mibi05g0640 495 SUPERFAMILY RING/U-box 429 483 - -
Mibi05g0640 495 MobiDBLite consensus disorder prediction 218 244 - -
Mibi05g0640 495 Coils Coil 330 364 - -
Mibi05g0640 495 MobiDBLite consensus disorder prediction 304 327 - -
Mibi05g0640 495 MobiDBLite consensus disorder prediction 52 74 - -
Mibi05g0640 495 MobiDBLite consensus disorder prediction 246 260 - -
Mibi05g0640 495 MobiDBLite consensus disorder prediction 198 217 - -
Mibi05g0640 495 MobiDBLite consensus disorder prediction 75 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0640 Mibi-ChrMibi05 6155366 6157650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0640 337 483 C3H Transcription Factor Family AT2G15530 42.177 4.62e-33 131