Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0564 ATGGGCGAATCCTTTGTCATCGACGACCTCCTTGATTTTCCCAGCGACGATGATCCTATTCCTATCCCCCTCGGCTCTTCCTTTCATTCTCTCCCCGCTGACTCTACCAACTCTTCCTCCCTCACCTCCGCCGTCATTTCCTCCTCTGCCTCCCACTCTAATGTCGCCGCCGCCGCCTCCAATACCACCAGTCTCCACCACCCACATCTCCCCGGCGACCTCTGCGTCCCCGTGCCCGAGGATGATATGGCGGAGCTGGAATGGCTTTCCAACGTGGCGGAGGAATCATTCTCGAGCGAGGACCTTCAGAAGCTGCAACTAATATCGGGCATAAAAGTGGAACCATCAGAAACTCACGACCACAGCATCGTCGTCAGCAGCAGCAGCAACAACCCAATATTTGAGTCCGAGGTTTCAGTTCCGGGGAAAGCTAGGAGCAAGCGGCCACGTGTCACCCCAGGCAACTGGACCACGCGCCTCCTCCACGTTTCTCACTCCCCATCTCCATCTCCATCTCCATCTCCATCAATATCCTCCGCCTCTTCTTCCTCTGACCCAGACGCTGTATTCCATTCCACCGCCGGCAAGAAAAGGCCGGCGCCGAGGAGGAAGGACATCGGCGGCGAGGACCGGAGATGCCTGCATTGTGCTACCAATACGACCCCACAGTGGCGGACTGGGCCCATGGGCCCAAAAACGTTATGCAATGCGTGTGGTGTGAGGTACAAGTCAGGGCGCCTCGTGCCGGAGTATCGCCCCGCGGCCAGCCCCACATTCGTGCTGACCAAGCATTCCAACTCGCACCGGAAGGTCATGGAGCTCCGAAGGCAGAAGGAGATCATGCAGCATCATCAACACCATCATCCTAATTTGATGTTTGACTTTCATGTGTCCAATGGCGATGATTATTTGATTCACCAACACCTTGGTCATGACTTTAGGCAGCTCATTTAG 954 0.5597 MGESFVIDDLLDFPSDDDPIPIPLGSSFHSLPADSTNSSSLTSAVISSSASHSNVAAAASNTTSLHHPHLPGDLCVPVPEDDMAELEWLSNVAEESFSSEDLQKLQLISGIKVEPSETHDHSIVVSSSSNNPIFESEVSVPGKARSKRPRVTPGNWTTRLLHVSHSPSPSPSPSPSISSASSSSDPDAVFHSTAGKKRPAPRRKDIGGEDRRCLHCATNTTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIMQHHQHHHPNLMFDFHVSNGDDYLIHQHLGHDFRQLI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0564 317 MobiDBLite consensus disorder prediction 120 136 - -
Mibi05g0564 317 Gene3D - 208 257 IPR013088 GO:0006355|GO:0008270
Mibi05g0564 317 Pfam GATA zinc finger 213 246 IPR000679 GO:0006355|GO:0043565
Mibi05g0564 317 MobiDBLite consensus disorder prediction 151 167 - -
Mibi05g0564 317 CDD ZnF_GATA 212 259 IPR000679 GO:0006355|GO:0043565
Mibi05g0564 317 FunFam GATA transcription factor 203 288 - -
Mibi05g0564 317 MobiDBLite consensus disorder prediction 116 207 - -
Mibi05g0564 317 MobiDBLite consensus disorder prediction 175 189 - -
Mibi05g0564 317 ProSiteProfiles GATA-type zinc finger domain profile. 207 243 IPR000679 GO:0006355|GO:0043565
Mibi05g0564 317 PIRSF Txn_fac_GATA_plant 1 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mibi05g0564 317 PANTHER GATA TRANSCRIPTION FACTOR 4 285 - -
Mibi05g0564 317 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 271 - -
Mibi05g0564 317 ProSitePatterns GATA-type zinc finger domain. 213 238 IPR000679 GO:0006355|GO:0043565
Mibi05g0564 317 SMART GATA_3 207 257 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0564 Mibi-ChrMibi05 5447906 5449099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0564 5 317 C2C2-Gata Transcription Factor Family AT5G25830 48.955 9.28e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi05g0564 GATA 1.8e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0564 05 5447906 5449099 Mibi05g0564 05 5447906 5449099 ECH