Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0560 ATGGCCAAAGGAGTTCATCAAATGTTTCCAAAGTGCCTCACGTTGGTGTGCCTCCTCATGCTGGTCTTCAATCTTGGCTTATCTTCATCAAATGAACTTGAGCTTCTCTTATCCTTCAAAGCTTCAGCCAATGACCCACATCACTCTCTTTCAAACTGGCTCAATTCTTCAGCCACCTTCTGTAACTGGAATGGCCTCACCTGCGATGACCAAACCTCGTCTCACGTGACCTCCATCCAACTCTCAGGTAAAAACATGTCTGGAAAAATTTCCTCTTCCATGTTCAAACTCCCAAACGTAAAAAATATCGACCTTTCTAGCAATCAGTTCTCAGGTCAAATTTCTTTCTCCTTCCCTTCTTCCTCTCTCTCGTTGTCACTTCTTTACCTCAACCTCAGCAACAATAACCTTACCGGCTCTTTGCCTGAGTTCATATTTTCTGTCTCATTTTCCCGCCTTGAGTCCTTGGATCTCTCAAACAACATGTTTTCCGGCATAATTCCTCAACAGGTTGGTCTTCTTTCCAGACTAAAATATCTTGATGTGGGGGGGAACGTTCTGGTGGGAGGAATTCCAAGTTCCATCACCAACATCACAGGTTTAGAATACTTGACACTTGCTTCCAACCAGTTAGTGGGAAAAATCCCACGTGACATGGGTGTGATGAAGAACTTGAAGTGGATTTACATGGGTTACAACAACCTCTCTGGTGAAATCCCTATGAGTATTGGGAATTTATTCTCTCTCTATCATCTCGACCTTGTGTACAACAACCTCACTGGATTCATCCCAGAATCTCTAGGAAACCTCACCAACCTTGAGTTTCTGTTTCTCTACAGAAACAACCTCATAGGTTCCATTCCCACTTCCGTTTTCAACCTTAAAAACCTTGTCGCCCTTGATCTAAGTGATAATTCTCTTCAGGGAGAGATTCCTGAGCTTGTGAATAACCTTCAAAGGCTGGAGATTCTCCAGCTTTTCTCCAACAACTTTACCGGAAAGATTCCAAGAGGTTTAACAGCTTTACCTAAGCTTGAAGTCCTTCAACTGTGGTCCAACAGGTTAACAGGAGAGATTCCAAAAGAACTTGGAACCAACAACAACCTCACTGTTCTAGACCTTTCCACCAACAACCTCTCAGGAGAAATCCCACATGGCTTATGTCACTCCATGAATCTTTACAAGCTCATCCTCTTCTCCAACTCTCTCCAAGGTCAAATCCCTCACAGTCTAGCCTCCTGTACTAGCCTCCGCCGTGTTCGCCTCCAGAACAACAACCTCTCCGGCCGGTTACCGCCGGAATTCACCAAACTACCACAAGTATACTTGTTGGACATGTCCGGTAATAAATTTTCTGGGAGGATTGATGATAGGAAGTGGGACATGCCAGCGCTCCAGTTGCTGAATCTGGCTAACAACAATTTCTCTGGAGAGTTACCTGATTCTTTTGGGAGTAACGTACTAGAGAATCTGGACTTGTCGGAGAATCAGTTTTCAGGTAAGATTCCACGTGGCATGGGGAACTTAACGGAGCTGGTGCAGTTAAAGCTTAACAGAAACAGGTTGTCTGGTAACATCCCTAACGAACTTTCTTCATGCAACAAGCTCGTGTCTTTAGACCTCAGTCACAATCAGCTCACAGGCCAAATTCCAGTGAGTTTAGGAGAAATGCCAGTTTTAGGGATGCTTGACCTTTCTGAGAATCAACTATTGGGTGAGATTCCAGAAAATTTAGGAAGCGCCCAATCACTCGTGGAACTCAATATATCATACAACCGTTTTCATGGGAGGTTACCGTCTACCGGAGCCTTCCTGGCCATTAATATCAGTGACGTGGCAGGCAATGACCTTTGTGAGAGTGATGGGAGTGACAGTAGAAGCGGTTTGCCACCATGTGACAAAAGAGAGGATAGTAAGAATCCGGCGTTTTGGTGGTTTTTTCTGTTTGGTCTTGTAGGCTTCCCCCTTGCCGCTTTTCTCATTGTCTTCTTCATACGTAGAAGAAGACAGAAGTTGCATGAGATGATGACCACGAGGGTGGAAAATGAAGACGGCACATGGGAAATGCGTTACTTTGACTACAAGGCTTCAAAACTCATCACCATCAATGATGTATTATGTTGTGCAAAAGAAGGAGTTATAATCACTCAAGGACGAAGAAACAAGACAATAGTGCAATTCCAGTTGAAGGAGATGAGTGATCTGAATTGCTTCTCGGAAGACATTGGTAAGCTTCGGCATCCAAACATTGTTAAGTTGACGGGAATATGCAGGTGTGGGAAAGGAGGGTACTTGGTGTATGAATACGTGGATGGAAAATACCTAAACGACGTCGTTTCGAGTCTAAGTTGGGAACGACGACGAAACATTGCACTTGGAATCGCAAAAGCGCTAAAGTATTTGCATGCTCATGCTTCATCGTTTGCTAATTTGGTAGGCGAGATGTCACCTCAAAGAGTTGTGGTGGACACAAAAGATGTTCCTCGTCTCATGTTGTGTCCTCTCAAGTCTTCCATTTCTTCGCCTTACGTTGCCCCTGAGTCGAGAAATGGGAAGGAGGTAACAGGGAAGAGTGACATATACGGACTTGGTGTTATTCTGATAGAATTACTGACGGGAAGGAGTTCGGTGGACGAAGAAGTGGGCATGAAGCAGGAGGGCATTGTTGGGTGGGCCCGTTATTGTTATTCGGACTGTCATATGGATACATGGATCGACCCGATCATGAACGGTGGGATTGCCACGTCGGCTCAAAACGACATCGTCCAGGTCATGAATCTGGCACTTCAGTGCACAGCCACTGATCCCACAGCAAGGCCGAGCGCTAGCCACGTGTTCAAAACCCTAAACGCTCTGACCGTTTAA 2865 0.451 MAKGVHQMFPKCLTLVCLLMLVFNLGLSSSNELELLLSFKASANDPHHSLSNWLNSSATFCNWNGLTCDDQTSSHVTSIQLSGKNMSGKISSSMFKLPNVKNIDLSSNQFSGQISFSFPSSSLSLSLLYLNLSNNNLTGSLPEFIFSVSFSRLESLDLSNNMFSGIIPQQVGLLSRLKYLDVGGNVLVGGIPSSITNITGLEYLTLASNQLVGKIPRDMGVMKNLKWIYMGYNNLSGEIPMSIGNLFSLYHLDLVYNNLTGFIPESLGNLTNLEFLFLYRNNLIGSIPTSVFNLKNLVALDLSDNSLQGEIPELVNNLQRLEILQLFSNNFTGKIPRGLTALPKLEVLQLWSNRLTGEIPKELGTNNNLTVLDLSTNNLSGEIPHGLCHSMNLYKLILFSNSLQGQIPHSLASCTSLRRVRLQNNNLSGRLPPEFTKLPQVYLLDMSGNKFSGRIDDRKWDMPALQLLNLANNNFSGELPDSFGSNVLENLDLSENQFSGKIPRGMGNLTELVQLKLNRNRLSGNIPNELSSCNKLVSLDLSHNQLTGQIPVSLGEMPVLGMLDLSENQLLGEIPENLGSAQSLVELNISYNRFHGRLPSTGAFLAINISDVAGNDLCESDGSDSRSGLPPCDKREDSKNPAFWWFFLFGLVGFPLAAFLIVFFIRRRRQKLHEMMTTRVENEDGTWEMRYFDYKASKLITINDVLCCAKEGVIITQGRRNKTIVQFQLKEMSDLNCFSEDIGKLRHPNIVKLTGICRCGKGGYLVYEYVDGKYLNDVVSSLSWERRRNIALGIAKALKYLHAHASSFANLVGEMSPQRVVVDTKDVPRLMLCPLKSSISSPYVAPESRNGKEVTGKSDIYGLGVILIELLTGRSSVDEEVGMKQEGIVGWARYCYSDCHMDTWIDPIMNGGIATSAQNDIVQVMNLALQCTATDPTARPSASHVFKTLNALTV 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0560 954 FunFam Leucine-rich repeat receptor protein kinase EMS1 149 240 - -
Mibi05g0560 954 SUPERFAMILY RNI-like 78 428 - -
Mibi05g0560 954 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Mibi05g0560 954 Pfam Protein tyrosine and serine/threonine kinase 838 948 IPR001245 GO:0004672|GO:0006468
Mibi05g0560 954 ProSiteProfiles Protein kinase domain profile. 648 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g0560 954 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 326 628 - -
Mibi05g0560 954 Pfam Leucine Rich repeat 532 548 IPR001611 GO:0005515
Mibi05g0560 954 Gene3D Ribonuclease Inhibitor 29 190 IPR032675 -
Mibi05g0560 954 SUPERFAMILY L domain-like 366 618 - -
Mibi05g0560 954 PANTHER RECEPTOR-LIKE PROTEIN 55 395 950 - -
Mibi05g0560 954 FunFam Leucine-rich repeat receptor-like kinase 31 148 - -
Mibi05g0560 954 Pfam Leucine Rich Repeat 249 270 IPR001611 GO:0005515
Mibi05g0560 954 Gene3D Ribonuclease Inhibitor 341 640 IPR032675 -
Mibi05g0560 954 ProSiteProfiles Leucine-rich repeat profile. 126 148 IPR001611 GO:0005515
Mibi05g0560 954 FunFam Leucine-rich repeat receptor protein kinase EMS1 241 325 - -
Mibi05g0560 954 Gene3D Phosphorylase Kinase; domain 1 721 771 - -
Mibi05g0560 954 SMART LRR_typ_2 150 174 IPR003591 -
Mibi05g0560 954 SMART LRR_typ_2 557 581 IPR003591 -
Mibi05g0560 954 SMART LRR_typ_2 246 269 IPR003591 -
Mibi05g0560 954 SMART LRR_typ_2 342 366 IPR003591 -
Mibi05g0560 954 SMART LRR_typ_2 509 533 IPR003591 -
Mibi05g0560 954 SMART LRR_typ_2 126 148 IPR003591 -
Mibi05g0560 954 SMART LRR_typ_2 462 485 IPR003591 -
Mibi05g0560 954 SMART LRR_typ_2 368 390 IPR003591 -
Mibi05g0560 954 SMART LRR_typ_2 270 294 IPR003591 -
Mibi05g0560 954 SUPERFAMILY Protein kinase-like (PK-like) 742 951 IPR011009 -
Mibi05g0560 954 Gene3D Ribonuclease Inhibitor 191 284 IPR032675 -
Mibi05g0560 954 Pfam Protein kinase domain 743 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g0560 954 Gene3D Ribonuclease Inhibitor 285 340 IPR032675 -
Mibi05g0560 954 PRINTS Leucine-rich repeat signature 294 307 - -
Mibi05g0560 954 PRINTS Leucine-rich repeat signature 153 166 - -
Mibi05g0560 954 Gene3D Transferase(Phosphotransferase) domain 1 772 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0560 Mibi-ChrMibi05 5398856 5402052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0560 15 949 Receptor kinase-like Gene Family AT2G25790 51.320 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Mibi05g0560 PK_Tyr_Ser-Thr 7.6e-08 CL0016