Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0517 ATGCAAATTTCGTTCCGTAATCGGTTTCGTTTATGGCGGAGAGTAATGATTTCTGGTTTGAAATTGTGTTCAGTTAGGGTTTTAATTACTGGTATGGGGAGAGGGAAGATCGTGATAAGGCGAATCGATAATTCGACGAGCAGGCAGGTGACATTCTCGAAGCGGAGGAATGGTTTACTGAAGAAGGCGAAGGAGCTGGCTATACTGTGCGATGCTGAGGTTGGAGTGATAATCTTCTCCAGCACTGGAAAACTCTACGATTTCGCCAGTTCCAGCATGAAATCAGTGATTGATCGATACAACAAGAATAAAGAAGAACAACATCCTCAACCTGGCAGTTCAACATCTGAAGTTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAACTGCAAAACTTGCAAGAAAATCACCGGCAAATGATGGGAGAAGAGCTTTCAAAATTGACTGTAAAAGAATTACAGGGTCTGGAAAGCCAAATGGAAATGAGCCTTCGGGGTGTCCGTATGAAAAAGGACCAACTTTTAATGAATGAAATACAGGAACTAAATCGAAAGGGTAGCCTTATACACCAAGAAAATGTGGAGCTTTATAAGAAGGTCTATGAAACAAGATATGGGAATACAACAAACAGAAATTCTGTTCTTACGAATGGTCTGGGCATAGGAGAGGACTTTCAGGTTCCTGTAAATCTCCAACTCAGCCAGCCTGAGCAATAA 723 0.4191 MQISFRNRFRLWRRVMISGLKLCSVRVLITGMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFASSSMKSVIDRYNKNKEEQHPQPGSSTSEVKFWQREAAMLRQQLQNLQENHRQMMGEELSKLTVKELQGLESQMEMSLRGVRMKKDQLLMNEIQELNRKGSLIHQENVELYKKVYETRYGNTTNRNSVLTNGLGIGEDFQVPVNLQLSQPEQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0517 240 Coils Coil 118 145 - -
Mibi05g0517 240 FunFam MADS-box transcription factor MADS-MC 44 116 - -
Mibi05g0517 240 Pfam K-box region 114 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi05g0517 240 ProSitePatterns MADS-box domain signature. 34 88 IPR002100 GO:0003677|GO:0046983
Mibi05g0517 240 ProSiteProfiles K-box domain profile. 118 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi05g0517 240 SMART madsneu2 32 91 IPR002100 GO:0003677|GO:0046983
Mibi05g0517 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 32 193 - -
Mibi05g0517 240 CDD MADS_MEF2_like 33 108 IPR033896 GO:0000977|GO:0045944
Mibi05g0517 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 88 IPR002100 GO:0003677|GO:0046983
Mibi05g0517 240 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677|GO:0046983
Mibi05g0517 240 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677|GO:0046983
Mibi05g0517 240 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677|GO:0046983
Mibi05g0517 240 ProSiteProfiles MADS-box domain profile. 32 92 IPR002100 GO:0003677|GO:0046983
Mibi05g0517 240 Gene3D - 44 112 IPR036879 GO:0003677|GO:0046983
Mibi05g0517 240 SUPERFAMILY SRF-like 33 108 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0517 Mibi-ChrMibi05 4942096 4955754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0517 32 240 MADS-box Gene Family AT4G37940 66.029 4.56e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi05g0517 K-box 7e-28 No_clan