Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0515 ATGAAAGGAGCTCGGGAATTTTTCAGGTCACTGCGAGTAAGTAAAGACAAGCAACGACACAACATGACGACTCCAGGGGTCCGATGGTACCTTCAAGGTCAGCATGTGGTGATGGATAATGGCATACTCCAAGTTACCTTATCAAACCCTGATGGAATTGTCACTGGGATTAGATATAATGGTGTTGATAATTTGCTCGAGGTCCTTAACAAGGAGACTAATCGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGTATGCCAATGCTTCTCACTCTTGAACATCTTTTAAGGTTATAGTTCAGAATGAGGAGCAGGTGGAACTTTCATTCACGCGGATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTTCCCTTAAATATTGATAAGAGATTTATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGCAATATATGAGCACTTAGCTGGATGGCCGGATTTTGATATTGGTGAAACGAGGATTACTTTCAAGCTGAGAAAAGACAAGTTTAATTACATGGCTGTAGAAGACAATAGGCAAAGGATTATGCCTCTTCCAGATGATCGGCTGCCAGGAAGATGCCAGCCCTTGGCCTACCCAGAAGCTGTCTTGCTAGTCAATCCCAAAAATCCACAACTCAAAGGCGAGGTGGATGACAAATATCAATATTCATGCATTAACATGAAAAATCAAGTCCATGGGTGGATATCTTTCAACCCACCAGTGGGATTCTGGCAGATTACACCCAGTGATGAGTTTCGCTCTGGTGGTCCCCTAAAACAGAATTTGACCTCACATGTTGGCCCTACCACACTTGCTATGTTTCTTAGTTCTCACTATGCTGGACAAGATTTAGATCCTAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTCTTTATGTATCTTAATTCTGGAGCAATTGGTGATGACCCACTTTGGCTGTGGGAGGATGCAAAAATACAGATGACGACTGAAGTCCAAAGTTGGCCATATTTTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGATCAACGGGGTAACGTTAGTGGTAGGCTACTTGTGTTAGACAGGTGCATCTGCCCAGATTTGATGTCAGCAAACGGTGCTTATGTTGGTCTTGCCCCACCTGGAGAGGAAGGATCATGGCAAAGGGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAAAATGGATTCTTTACCATTAAGAATGTACGTCCAGGGGACTACAACCTTTATGCTTGGGTCCCTGGTTTTGTTGGAGACTTCAGATTTGGTGATCTGATGAAGATAGATTCAGGTTCTTATATTGAATTGGGTGAAATTGTGTATGAGCCCCCAAGGGACGGACCTACGTTGTGGGAAATAGGCATTCCTGATAGATCTGCTGCAGAATTTTACGTTCCTGATCCAAATCCGAATCTCGTTAATAGGCTTTTTGCCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTATACAGAACTGTATCCTGATGCTGATTTGATTTACACAGTTGGTGCTAGTGATTATTCCAAGCACTGGTTTTTCGCTCAGGTTCCCAGAAAGAAAGAGGACAATAGTCTTCAAGGAACAACTTGGCAAATTAAGTTTGAACTCGGTAATGTTGCTCAGGGAAGTACATATAAACTCAGAGTTGCAATTGCATCTGCAACATTAGCTGAAGTGCAGATTCGAATAAACAATCCGAATGCAAAGCGCCCCCTATTCACCACTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCATGGGATCTATCGGCTGTATTATGTGAATGTACCAGGTGCTGCTCTTGTCGATGGCATGAACACTATATTTTTAACGCAACCAAGATGCAACAGCCCTTTTCAGGGGATCATGTATGATTATATCCGTCTGGAAGGACCTTCTTGTTTTTAG 1983 0.4317 MKGAREFFRSLRVSKDKQRHNMTTPGVRWYLQGQHVVMDNGILQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGIFDVYANASHSXTSFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDKFNYMAVEDNRQRIMPLPDDRLPGRCQPLAYPEAVLLVNPKNPQLKGEVDDKYQYSCINMKNQVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRGGEPWKKVFGPVFMYLNSGAIGDDPLWLWEDAKIQMTTEVQSWPYFFPASEDFLKSDQRGNVSGRLLVLDRCICPDLMSANGAYVGLAPPGEEGSWQRECKDYQFWTRADENGFFTIKNVRPGDYNLYAWVPGFVGDFRFGDLMKIDSGSYIELGEIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNLVNRLFANHPDRFRQYGLWDRYTELYPDADLIYTVGASDYSKHWFFAQVPRKKEDNSLQGTTWQIKFELGNVAQGSTYKLRVAIASATLAEVQIRINNPNAKRPLFTTGLIGRDNSIARHGIHGIYRLYYVNVPGAALVDGMNTIFLTQPRCNSPFQGIMYDYIRLEGPSCF 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0515 660 CDD RGL4_C 468 655 - -
Mibi05g0515 660 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 29 658 - -
Mibi05g0515 660 SUPERFAMILY Galactose-binding domain-like 463 655 IPR008979 -
Mibi05g0515 660 SUPERFAMILY Galactose mutarotase-like 34 322 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mibi05g0515 660 SUPERFAMILY Starch-binding domain-like 356 437 IPR013784 GO:0030246
Mibi05g0515 660 Pfam Polysaccharide lyase family 4, domain III 466 654 IPR029411 -
Mibi05g0515 660 Pfam Rhamnogalacturonate lyase family 20 226 IPR010325 -
Mibi05g0515 660 CDD RGL4_M 357 456 IPR029413 -
Mibi05g0515 660 Gene3D - 30 333 IPR014718 GO:0030246
Mibi05g0515 660 FunFam Rhamnogalacturonate lyase B 354 453 - -
Mibi05g0515 660 CDD RGL4_N 27 318 - -
Mibi05g0515 660 Gene3D - 464 655 - -
Mibi05g0515 660 Gene3D - 354 438 - -
Mibi05g0515 660 Pfam Polysaccharide lyase family 4, domain II 380 451 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0515 Mibi-ChrMibi05 4909078 4914329 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0515 22 657 Polysaccharide Lyase AT1G09910 70.597 0.0 943