Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0513 ATGTGTCGTGGTAGTTCTGGCTTCTACACCTATGCTATTTACGAACACTTGGATGAATGGCCCGGTTTCAGTATGGGCGAAACCAGAATTGCTTTCAAGCTCAGCAGAGAAAAGTTTCATTACATGGCTATGGCAGATAATAGACAAAGAAATATGCCTCTTCCAGGTGACAGAATCCCACCAAGAGGTCAACCCCTGGCCTATCCCGAGGCTGTTCTTCTTGTTGACCCTATCGAGCCTGAATTTAAAGGAGAGGTGGACGACAAGTACCAATATTCATGCGACAACAAAGATAGCAAGGTGCATGGATGGATTTGCACGGAGCCGGCGGTCGGATTCTGGGTTATAACGCCCAGCAACGAGTTCCGATCCGGTGGGCCCCTCAAACAGAACCTAACTTCCCATGTGGGACCCACCACTCTTGCTGTAAGGAGTTCCTTTATCCATGTCTTAATTATCATCTCAACAAATATTCAATTATTCATCGAAACTCATCTCACATCATACAAATACAATCTCCTGATTCAGGTGTTTCTAAGCGCTCATTATAGCGGAGAAGATCTGGTGCCAAGATTTAAAGCTGGTGAGGCATGGAAGAAAGTATTTGGTCCTATTTTCATCTATTTGAATTCCACAGATAATGGGGGCAACCCTTTTAATCAGCTATGGGAAGACGCCAAACTTCAGATGCAAATAGAAGTTCAAAGCTGGCCCTACAATTTTCCTGCCTCACAAGATTACCTTAAGTGGGACCAACGTGGGAATGTCAATGGCAGGCTACTTGTTCGAGACAAGTATATTAGTGACGATTATATCTCAGCAAAAGGAGCTTATGTTGGGTTGGCTCCACCAGGAGACGCCGGATCATGGCAGAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCGGACGATGATGGATATTTCTCCATCAGCAATATATGCCCTGGGGACTACAATCTTTACGCATGGGTCCCTGGTTTTATTGGTGATTATAGATATGATGAGATCATGAACATAACTCCAGGTAGTGTCATAATCGTAGGTGATCTTGTGTATGAACCTCCTAGAGATGGTCCAACATTGTGGGAAATAGGCATTCCTGATCGTACAGCTGCTGAGTTTTATGTTCCTGATCCCAATCCCAAATATGTCAACAAACTTTTTGTTAATCATCCTGACAAGTTTAGGCAGTATGGGTTATGGGACAGATATGCAGAGTTATACCCTGACAAAGACTTGATTTACACAGTTGGTGTTAGCGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTCAAACTGGACAAAGTGAACAAGAAAAGTTTCTATAAGCTGCGCATAGCTGTTGCATCAGCAACATTTTCTGAACTGCAGGTTAGAGTGAATGATCCAAAAGCACCTCGTCCTCTGTTTTCAAGTGGGTTGATAGGGAGGGATAACTCCATGGCTAGGCATGGCATTCATGGGCTTTATTGGTTTTTCACTGCTGACATATTGGGTGCTCGTCTCGTGGAAGGAGATAATACCATCTTTTTGACTCAATCAAGAGGCAATAGCCCATTTCAGGGCATTATGTATGATTATATTCGTTTAGAAGGCCCTCCTTCCTCTGCGTCCAGCAACAACATTTGA 1686 0.4336 MCRGSSGFYTYAIYEHLDEWPGFSMGETRIAFKLSREKFHYMAMADNRQRNMPLPGDRIPPRGQPLAYPEAVLLVDPIEPEFKGEVDDKYQYSCDNKDSKVHGWICTEPAVGFWVITPSNEFRSGGPLKQNLTSHVGPTTLAVRSSFIHVLIIISTNIQLFIETHLTSYKYNLLIQVFLSAHYSGEDLVPRFKAGEAWKKVFGPIFIYLNSTDNGGNPFNQLWEDAKLQMQIEVQSWPYNFPASQDYLKWDQRGNVNGRLLVRDKYISDDYISAKGAYVGLAPPGDAGSWQRECKNYQFWAKADDDGYFSISNICPGDYNLYAWVPGFIGDYRYDEIMNITPGSVIIVGDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYVNKLFVNHPDKFRQYGLWDRYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDKVNKKSFYKLRIAVASATFSELQVRVNDPKAPRPLFSSGLIGRDNSMARHGIHGLYWFFTADILGARLVEGDNTIFLTQSRGNSPFQGIMYDYIRLEGPPSSASSNNI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0513 561 Gene3D - 251 346 - -
Mibi05g0513 561 CDD RGL4_C 363 550 - -
Mibi05g0513 561 FunFam Rhamnogalacturonate lyase B 249 348 - -
Mibi05g0513 561 SUPERFAMILY Galactose-binding domain-like 358 550 IPR008979 -
Mibi05g0513 561 SUPERFAMILY Starch-binding domain-like 295 348 IPR013784 GO:0030246
Mibi05g0513 561 Gene3D - 3 156 IPR014718 GO:0030246
Mibi05g0513 561 CDD RGL4_M 252 351 IPR029413 -
Mibi05g0513 561 Pfam Polysaccharide lyase family 4, domain II 275 344 IPR029413 -
Mibi05g0513 561 CDD RGL4_N 1 213 - -
Mibi05g0513 561 Pfam Polysaccharide lyase family 4, domain III 361 549 IPR029411 -
Mibi05g0513 561 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 553 - -
Mibi05g0513 561 Gene3D - 359 550 - -
Mibi05g0513 561 Pfam Rhamnogalacturonate lyase family 2 86 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0513 Mibi-ChrMibi05 4903145 4906680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0513 4 552 Polysaccharide Lyase AT1G09890 67.455 0.0 791