Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0511 ATGTCAACACAACTTACACAAGGAGTTCAGCTGCATATAGGAGACAATCATGTGGTGATGGATAACGGCATAGTGAAGGTTTACTTAGCCAAACCAGAAGGATTTGTCACTAGAATACAGTACAATGGCGTTGATAATCTTCTTGAAGTTCTTAATCCGAGAGATAACAGAGGATATTGGGATGTCGTTTGGAGTGAAGAAGGCAGTACAGGAACCACGGGGATATTCGAGCGCATCGTGGGAACAAGTTTCAGAGTGATAGTGGAAAATGAAGAACAGGTTGAGATCTCATTTACGAGAATGTGGGATCCATCTCTGAAGGGAAAGCTTTCGCCATTGAATATAGACAGAAGGTATGTCATGCTTCGTAATTCCTCAGGCTTCCACTCTTACGCCATTTTTGAACACCCGACAGACTGGCCCGCTTTCAACATACCCCAGATCAGGATCGTCTTCAAACTGAGAAAAGACAGGTATCATTACATGGCCGTAGCGGATAATAGGCAAAGATTTATGCCACTTCCTGACGATAGATTACCTGGAAGAGGAAAAGAACTTGCCCCACCAGAAGCAGTTTTACTTGTGAACCCTATAGAGGCAGAGTTCAAGGGGGAGGTGGATGACAAGTATCAATACTCAAGTGAAAACAAAGATCTGAAGGTGCATGGATGGATAAGCTCCGAAATAGAAACTGAAGCTCCCATGGGTTTCTGGGTAATCATACCTAGCAATGAATTCCGATCAGGGGGACCAGTTAAACAGAACCTCACCTCTCATGTGGGCCCCATCAGCCTCGCTATGTTCTTAAGTGCTCATTATGCTGGCGAGGATTTAGTTCTAAAACTCAAACCCAATGAGCCTTGGAAGAAAGTATTCGGGCCAATCTTTGTGTATTTGAACACTTTGTCGGATGATCAAGACACACAATGGCTCTGGGAGGATGCAAAAGATCAGATGACGAAGCAAGTTCAAAGTTGGCCTTATGATTTTCCAGCTTCAGAGGATTATCGGAAGTCTGACCAACGAGGCAGTGTTTGTGGAACACTACGAGTCCGAGACAGGTGTCAAAGTGAGGATTATATAATGGCACAAGGTGCATATGTAGGACTAGCCCCACCTGGAGACGCCGGATCATGGCAAAGAGAATGCAAGGGATACCAATTCTGGACAAGAACAGACGAGGAAGGCTTCTTCTCCATTAACAACATACGTAGTGGGGATTATAATTTATATGCATGGGTTCCTGGTTTCATCGGAGAATACTGGAACAACGGTGTCATCACCATCACCCCAGGTTGTGAAATAAATGTTGGTGACATTGTATATGAGCCCCCAAGAGATGGTCCAACATTATGGGAGATAGGCATTCCTGATCGCTCTGCTGCTGAATTTTATGTTCCTGATCCTAATCCCATGTACATTAACAAGCTTTATGTCAACCATCCAGATAAGTATAGGCAGTATGGCTTGTGGGAAAGATATACAGAACTATATCCAAAGGAAGATCTGGTTTACACAGTTGATGTCAGTGACTATAGGAAAGATTGGTTCTTTGCACAAGTAACCAGGAAGAAAGATGATGGAACTTACCAAGGAACTACATGGCAAATCAAGTTCAAGCTTGATAATGTGGTGGTATTTGGGACGTATAAGTTAAGATTGGCACTTGCAACTGCAAATGCAGCTGAATTACAGGTTAGGGTGAATGATTCGAAGCAAGAGCCAGCTCTGTTCAGGAGTGGTTTGATTGGAAAGGACAACACAATTGCAAGGCATGGAATCCATGGACTGTACAGGCTATATAGCATTGACGTGTGGGGTGGTCTTCTGATAAAAGGAGATAATACATTGTATCTTACTCAGGCTATGGCCACTGGTCCTTTTGAAGGAATCATGTATGACTATATACGCTTTGAAAGCCCACAATAA 1929 0.4339 MSTQLTQGVQLHIGDNHVVMDNGIVKVYLAKPEGFVTRIQYNGVDNLLEVLNPRDNRGYWDVVWSEEGSTGTTGIFERIVGTSFRVIVENEEQVEISFTRMWDPSLKGKLSPLNIDRRYVMLRNSSGFHSYAIFEHPTDWPAFNIPQIRIVFKLRKDRYHYMAVADNRQRFMPLPDDRLPGRGKELAPPEAVLLVNPIEAEFKGEVDDKYQYSSENKDLKVHGWISSEIETEAPMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDLVLKLKPNEPWKKVFGPIFVYLNTLSDDQDTQWLWEDAKDQMTKQVQSWPYDFPASEDYRKSDQRGSVCGTLRVRDRCQSEDYIMAQGAYVGLAPPGDAGSWQRECKGYQFWTRTDEEGFFSINNIRSGDYNLYAWVPGFIGEYWNNGVITITPGCEINVGDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHPDKYRQYGLWERYTELYPKEDLVYTVDVSDYRKDWFFAQVTRKKDDGTYQGTTWQIKFKLDNVVVFGTYKLRLALATANAAELQVRVNDSKQEPALFRSGLIGKDNTIARHGIHGLYRLYSIDVWGGLLIKGDNTLYLTQAMATGPFEGIMYDYIRFESPQ 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0511 642 Gene3D - 10 284 IPR014718 GO:0030246
Mibi05g0511 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 14 641 - -
Mibi05g0511 642 SUPERFAMILY Starch-binding domain-like 343 440 IPR013784 GO:0030246
Mibi05g0511 642 CDD RGL4_C 452 639 - -
Mibi05g0511 642 FunFam Rhamnogalacturonate lyase B 338 437 - -
Mibi05g0511 642 Gene3D - 338 437 - -
Mibi05g0511 642 CDD RGL4_M 341 440 IPR029413 -
Mibi05g0511 642 Pfam Polysaccharide lyase family 4, domain II 364 436 IPR029413 -
Mibi05g0511 642 CDD RGL4_N 15 308 - -
Mibi05g0511 642 Pfam Polysaccharide lyase family 4, domain III 450 637 IPR029411 -
Mibi05g0511 642 SUPERFAMILY Galactose-binding domain-like 447 639 IPR008979 -
Mibi05g0511 642 Coils Coil 554 574 - -
Mibi05g0511 642 Pfam Rhamnogalacturonate lyase family 10 206 IPR010325 -
Mibi05g0511 642 Gene3D - 448 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0511 Mibi-ChrMibi05 4890782 4894565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0511 9 641 Polysaccharide Lyase AT1G09890 66.246 0.0 880