Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0503 ATGGCCGCCGTGAATCCTCAACCTTTGCAGGCGCGTCCGTTCGAGAAACACGTGCAGGGGCCAGTAGAAATAGAGGACGATGACGGTGACTATGATGATGGAGGTGCTAGTGGCGATGCTATGGATGAATTGGAAGAGGGGAATGTTAATTCAGTGATTGTGCCAAACCATGGAGGATTTGTTACTACGTCCCGAACTAGTGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTATGTGTTTCCGGCGGTGACACCGGAGAAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGGACCTGATGTGCCTGCATGTGCTCCTTCTGTTGAAGTACCGTTTGATGAAAGCAAGGGCATAGGTGATACTCCAAAGCAGTTGAACCTTTCAAGAAGAATAGCATCCTTGGTTAGGTTCCGTGAAAAACGCAAAGAAAGATGTTTTGACAAGAAGATAAGATATTCCGTGAGAAAAGAGGTGGCACAAAGGATGCATCGCAAGAATGGGCAATTTGCATCCTTGAAAGAAAGTCCTGGTTCATCTAATGTGGATTCTACAGAAAGCTTTCATCAGGATGGCACTCATTCTGGAACTTTACGTAGATGTCAACATTGTGGTGTTAGTGAAAATAATACTCCTGCAATGCGTCGTGGTCCAGCTGGACCAAGGACTCTATGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTCAGTAAGGGAGGGAGAAATCTTTCTGAGCAAAGTGAGCTGGAGACTCCTCTTGAGGTCAAACCAATTATCCTGGAAGAAGAATTTCTTGGCATCCATGACAAGCAAGGAATTTCTGAAGATCCTTCCAAGGCCATTGCTGAAGGATCTAATAACCATGCTGTCAATCCCAGTGATGAGGATTTGCCGTCTGGTGAAAGCTTATCAAACGCACTGTCAGCAGGCTTTGTGCATTCTTCAGCAAATGATGATGAGCAGGAACCTCTGGCTGAGCTGTCTAATCCTTCCGACACAGATATTGACATACCTGGAAACTTCGATTAG 1038 0.4586 MAAVNPQPLQARPFEKHVQGPVEIEDDDGDYDDGGASGDAMDELEEGNVNSVIVPNHGGFVTTSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGPDVPACAPSVEVPFDESKGIGDTPKQLNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNVDSTESFHQDGTHSGTLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSEQSELETPLEVKPIILEEEFLGIHDKQGISEDPSKAIAEGSNNHAVNPSDEDLPSGESLSNALSAGFVHSSANDDEQEPLAELSNPSDTDIDIPGNFD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0503 345 Pfam tify domain 65 96 IPR010399 -
Mibi05g0503 345 MobiDBLite consensus disorder prediction 170 195 - -
Mibi05g0503 345 Gene3D - 194 246 IPR013088 GO:0006355|GO:0008270
Mibi05g0503 345 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Mibi05g0503 345 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
Mibi05g0503 345 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Mibi05g0503 345 MobiDBLite consensus disorder prediction 283 331 - -
Mibi05g0503 345 SMART tify_2 62 97 IPR010399 -
Mibi05g0503 345 MobiDBLite consensus disorder prediction 165 195 - -
Mibi05g0503 345 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Mibi05g0503 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 243 - -
Mibi05g0503 345 PANTHER GATA TRANSCRIPTION FACTOR 28 3 338 IPR045280 GO:0006355
Mibi05g0503 345 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Mibi05g0503 345 ProSiteProfiles GATA-type zinc finger domain profile. 193 249 IPR000679 GO:0006355|GO:0043565
Mibi05g0503 345 MobiDBLite consensus disorder prediction 1 38 - -
Mibi05g0503 345 MobiDBLite consensus disorder prediction 280 345 - -
Mibi05g0503 345 CDD ZnF_GATA 198 242 IPR000679 GO:0006355|GO:0043565
Mibi05g0503 345 Pfam CCT motif 129 170 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0503 Mibi-ChrMibi05 4800665 4806557 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0503 28 258 Tify Gene Family AT1G51600 47.925 3.01e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi05g0503 CCT 1e-13 CL0281