Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0501 ATGTACGGACAACTCCCATCGATGAACGTAACTAATCGGATCAGCACAGGAGAAGATGAAGATGGCGCCGGCATTGGCGCCGAATCAATTGATAATCACAACATCCATTATGAAACGCAAGCCCTTGAAGATGGCAGTGGTGGAGTCGGGGGCGTAGTGGAGGATGTGAACTCCGATGCCGTATATGTCTCAGGCAGTGGTTCTGAATTGTCCATCCCACATGAGGATCCTAGCCAACTTACGCTGTCTTTTCGTGGTCAAGTTTATGTTTTTGACTCTGTTACCCCTGATAAGGTGCAAGCGGTTTTGTTACTGTTGGGTGGATCTGAAATACCACCGGGTTCGCAATGTGAGGATATATCCCCTCAAAATGAGAGGGGTGCGATGGATTACCCTGGAAGATGTAGTATGCCACACCGAGCAGCCTCTTTAAGCAGGTTTCGTCAGAAGAGGAAAGAGCGATGCTTTGACAAGAAAGTTAGATATAGTGTGCGTCAAGAGGTTGCTCTCAGGATGCACCGTAATAAGGGTCAGTTTACTTCTTCTAAGAAGCAAGATGGATCTAATAGTTTGGGAACAGTCCAAGAGTCAGGGCAGGATGACAATCAGTCAGAAACCTCGTGCACGCATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGTGGGCCATCTGGACCAAGGTCACTATGCAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTACGTTGAGGGACTTATCCAAGAAAAACCACGAACATTCTCTTGCATCGGTGGAGCAGGTTGAACGTGATGATTCACATTCTCGGACCACTAACCCTGCACACAACAGTCTTGTGGTTTTTCCTGATAATGATAAGCCGGCATAG 873 0.4754 MYGQLPSMNVTNRISTGEDEDGAGIGAESIDNHNIHYETQALEDGSGGVGGVVEDVNSDAVYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDISPQNERGAMDYPGRCSMPHRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGSNSLGTVQESGQDDNQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNHEHSLASVEQVERDDSHSRTTNPAHNSLVVFPDNDKPA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0501 290 MobiDBLite consensus disorder prediction 1 28 - -
Mibi05g0501 290 MobiDBLite consensus disorder prediction 256 272 - -
Mibi05g0501 290 MobiDBLite consensus disorder prediction 173 227 - -
Mibi05g0501 290 ProSitePatterns GATA-type zinc finger domain. 208 235 IPR000679 GO:0006355|GO:0043565
Mibi05g0501 290 Gene3D - 198 260 IPR013088 GO:0006355|GO:0008270
Mibi05g0501 290 PANTHER GATA TRANSCRIPTION FACTOR 28 25 272 IPR045280 GO:0006355
Mibi05g0501 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 256 - -
Mibi05g0501 290 SMART tify_2 73 108 IPR010399 -
Mibi05g0501 290 MobiDBLite consensus disorder prediction 256 290 - -
Mibi05g0501 290 Pfam tify domain 76 107 IPR010399 -
Mibi05g0501 290 MobiDBLite consensus disorder prediction 181 221 - -
Mibi05g0501 290 Pfam CCT motif 140 182 IPR010402 GO:0005515
Mibi05g0501 290 Pfam GATA zinc finger 208 244 IPR000679 GO:0006355|GO:0043565
Mibi05g0501 290 SMART GATA_3 202 255 IPR000679 GO:0006355|GO:0043565
Mibi05g0501 290 ProSiteProfiles GATA-type zinc finger domain profile. 202 260 IPR000679 GO:0006355|GO:0043565
Mibi05g0501 290 MobiDBLite consensus disorder prediction 1 16 - -
Mibi05g0501 290 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Mibi05g0501 290 CDD ZnF_GATA 207 252 IPR000679 GO:0006355|GO:0043565
Mibi05g0501 290 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0501 Mibi-ChrMibi05 4791662 4797538 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0501 67 269 Tify Gene Family AT4G24470 65.217 1.13e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi05g0501 CCT 3.6e-15 CL0281