Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0491 ATGGCGAGGGAGAAGTTAAAGATAAAGAAAATAGAAAACATAACGGCGAGACAGGTAACATTCTCAAAGAGGAGGCGAGGGCTCATCAAGAAAGCTCAAGAGCTTTCTGTTCTTTGTGATGCTGAGATTGGTCTCATTATTTTCTCTGCCACAGGAAAGCTCTATGATTATTCCAGCACCAGCATAAAGGACATCGTTACAAGGTATAATCTGCACTCTCATGGCAGCAATCCATTGGACAGTCATTCCCTAGAGCTGCAGAGCAGCAGTGAAAGCAGATTGAGGAATGAGATAGCTAATAAAACCCACGAAATTCGGTATATATCTGAATCTCCCAATTTTCTCCTGAAGGGCGAAGATCTTGAAGGACTCGACCTCGATGATTTGCAGAAGCTGGAGAAAAAGCTTGACATTGGACTCAGTCGTGTGACTCAGATTATGGAAGAGCGGAGTACGGGTGAAATGGCTGATCATCAAAGGAAGGTAGACGATTTGGCCAAAGTGAACAGGCAGATAAAGCAGAAGGTGGCTATTATACGTAAAGGAAGAGATTTTATGATGGTGAACTCGGATAAGGGCAAGCTGAAAGATGTTTCAGCACAAGCCATGAATAATAATAATAAGGGCAACATAAATGGCTTTCTTCTCGATGATGACGATACCTCTAGCACGTGTCTGAGGTTAGGGTAA 690 0.429 MAREKLKIKKIENITARQVTFSKRRRGLIKKAQELSVLCDAEIGLIIFSATGKLYDYSSTSIKDIVTRYNLHSHGSNPLDSHSLELQSSSESRLRNEIANKTHEIRYISESPNFLLKGEDLEGLDLDDLQKLEKKLDIGLSRVTQIMEERSTGEMADHQRKVDDLAKVNRQIKQKVAIIRKGRDFMMVNSDKGKLKDVSAQAMNNNNKGNINGFLLDDDDTSSTCLRLG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0491 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Mibi05g0491 229 Coils Coil 155 175 - -
Mibi05g0491 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi05g0491 229 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Mibi05g0491 229 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mibi05g0491 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi05g0491 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi05g0491 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi05g0491 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi05g0491 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi05g0491 229 FunFam Transcription factor, MADS-box 13 83 - -
Mibi05g0491 229 Pfam K-box region 88 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi05g0491 229 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mibi05g0491 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi05g0491 229 ProSiteProfiles K-box domain profile. 84 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0491 Mibi-ChrMibi05 4691954 4696168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0491 1 229 MADS-box Gene Family AT2G22540 40.984 3.08e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi05g0491 K-box 2.8e-09 No_clan