Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0462 ATGACAATTCACTTCTCACTCTCCACTTTCGACGACCACCACCACCATGGCCTCCTCTGCCTTGCCCTGTTTCTACTCACCTCCCGGGCCGCCGCTCAGTTCCCGGCGGCGCCGCCGCCTCCGCCGACCGACCCTTTCGCCAGGCTAAAATTCGACAAGAACATGGCCATCATCATGGTCATCCTCGTCCTGGTGTTCTTCATCCTGGGCTTCCTTTCCATCTACACTCGCCAATGTGCAGAGCGCAGAATGAGAGGAAGACTCGACCTTTCTCTCCCCATCGGGATCAGCAGCAGGCGGCCACGTGGCCTTGACGCCGACATCATCGACAGCTTCCCCACCTTCGTTTACTCCTCCATCAAGGGGCTCAAGATGGGGTCCACCTCCCTGGAATGCGCCGTCTGCTTGAACGAATTCCAAGACGATGAAACGCTGCGTTTGATTCCCAAATGCAGCCACGTGTTCCATCCCCAATGTATCGATCTTTGGCTTTCCTCTCACTCCACCTGCCCCCTTTGCCGGGCCAATCTTATTCCCAAGCCCGGTGATTCCTCCTTCGTCGCCGTTCAGATCCCAAATCCAGATTCCGATTCACCTCAGCCGTCAGATTCGATTCCCGATTCCCGTGAGCTCCCACAGGAAAACACCCACACGCCGGAATCTCCGATTCTAGGCCGGACGACCGGGTCAAAGTCAACGGGGTTTCGACTGGGCGGCTTATTCCCGCGATCTCACTCAACGGGTCATTCGCTGCAGGTTCAGAACTGGGAAAGGTTTACACTGAGATTACCGGAGGATACAAGAAAGGAGCTGCTAAAGCGAACAAATAGTTGTGTGGCGTTCATAGGGGAGAGAAGCCAGAGGAGGGGCTTTAGGGCAAGAAGTGTGGGGAGGAACTATTTGCAGTACGAGCGATTCGGCGGCGAGGGGCAGTGGGGTTTCACGGTGAGGCCGCCGTTTTTGAGCCGGAGTGGCTCCACACCGGTGGACCCATCTGGGGTGGCTTTGGATGACACAGGGGAACGATCTTCTGATCCATTGTTTCCGGCGGCAAGCAAAGATTAG 1065 0.5643 MTIHFSLSTFDDHHHHGLLCLALFLLTSRAAAQFPAAPPPPPTDPFARLKFDKNMAIIMVILVLVFFILGFLSIYTRQCAERRMRGRLDLSLPIGISSRRPRGLDADIIDSFPTFVYSSIKGLKMGSTSLECAVCLNEFQDDETLRLIPKCSHVFHPQCIDLWLSSHSTCPLCRANLIPKPGDSSFVAVQIPNPDSDSPQPSDSIPDSRELPQENTHTPESPILGRTTGSKSTGFRLGGLFPRSHSTGHSLQVQNWERFTLRLPEDTRKELLKRTNSCVAFIGERSQRRGFRARSVGRNYLQYERFGGEGQWGFTVRPPFLSRSGSTPVDPSGVALDDTGERSSDPLFPAASKD 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0462 354 SMART ring_2 132 173 IPR001841 -
Mibi05g0462 354 Pfam Ring finger domain 131 174 IPR001841 -
Mibi05g0462 354 CDD RING-H2_EL5_like 131 174 - -
Mibi05g0462 354 FunFam E3 ubiquitin-protein ligase ATL6 94 180 - -
Mibi05g0462 354 PANTHER RING FINGER DOMAIN-CONTAINING 37 185 - -
Mibi05g0462 354 MobiDBLite consensus disorder prediction 189 234 - -
Mibi05g0462 354 MobiDBLite consensus disorder prediction 186 239 - -
Mibi05g0462 354 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Mibi05g0462 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 179 IPR013083 -
Mibi05g0462 354 MobiDBLite consensus disorder prediction 317 354 - -
Mibi05g0462 354 SUPERFAMILY RING/U-box 113 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0462 Mibi-ChrMibi05 4403262 4404326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0462 7 324 Rapid Response to Elicitors AT3G05200 38.663 3.06e-61 199