Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0460 ATGGCACTAGAGGCAGTAGTTTTCTCACAAGATCCCTTCTTGTATAGTTGCTGCAGGGACTCATACTCCTTCCCCGCAGCTTGGAACACCGACGAGCATGGCTTCCATGCAGAAGAAGAGAAATCCCATGTGGGAGTATCCATCAACACTAACATAGAACCCACACATGTCGTCCATGCTACCTGGGATTCATCAAACTCTTCTCCTGAGGGATCACTGGTCTCCCCTGCTCCGACGGGTCGGCGTAAACGACGTCGCACAAAGAGTGCAAAGAACAAAGAGGAGATTGAGAACCAGAGGATGACCCACATTGCTGTGGAGCGCAATCGACGGAGACAGATGAATGACTATCTGGCTGTGCTTCGTTCCCTTATGCCTCCGTCTTACGTTCAAAGGGGGGACCAGGCGTCTATAATAGGAGGCGCCATTAACTTTGTGAAGGAACTTGAGCAGCTATTACAGTCAATGGAGGGACGAAAGAAGAAGTCAAAGCAGCGAGCAGAGGGAGAGTGTAGCTCACCGTTTGCCGAGTTCTTCACGTTTCCACAGTATTCGACTAATGCAAATCAGGGGAATAGGAATTCCCATGAATTGGCTGTCGCTGACATTGAAGTGACCATGGTGGACACACATGCCAACCTTAAGATACTCTCAAAAAAACGTTCTAATCATCTCACTAAGATCGTCGTCGGTCTTCAGGCTCTCCGGCTCACAGTTCTCCACCTTAATGTGTCCACTCACGACGACATGGCCCTTTACTCTGCTAGCGTCAAGCTTGAAGATGGGTGTGAGCTGAATACTGTGGATGAAATAGCTTCTGCCGTGAATCAACTAATGCGCAGAATCCAAGAGGAATCGCCTTTCTCCTAG 870 0.4908 MALEAVVFSQDPFLYSCCRDSYSFPAAWNTDEHGFHAEEEKSHVGVSINTNIEPTHVVHATWDSSNSSPEGSLVSPAPTGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRRQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEGRKKKSKQRAEGECSSPFAEFFTFPQYSTNANQGNRNSHELAVADIEVTMVDTHANLKILSKKRSNHLTKIVVGLQALRLTVLHLNVSTHDDMALYSASVKLEDGCELNTVDEIASAVNQLMRRIQEESPFS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0460 289 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Mibi05g0460 289 CDD bHLH_AtFAMA_like 101 174 - -
Mibi05g0460 289 PANTHER MAX DIMERIZATION, MAD 61 285 - -
Mibi05g0460 289 SMART finulus 104 155 IPR011598 GO:0046983
Mibi05g0460 289 Coils Coil 146 166 - -
Mibi05g0460 289 FunFam Basic helix-loop-helix transcription factor 89 164 - -
Mibi05g0460 289 Gene3D - 89 166 IPR036638 GO:0046983
Mibi05g0460 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 163 IPR036638 GO:0046983
Mibi05g0460 289 MobiDBLite consensus disorder prediction 61 96 - -
Mibi05g0460 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0460 Mibi-ChrMibi05 4386999 4388201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0460 1 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.320 5.74e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi05g0460 HLH 3.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2251 08 40250178 40251263 Mibi05g0460 05 4386999 4388201 CCT
Mibi05g0460 05 4386999 4388201 Mibi05g0460 05 4386999 4388201 ECH