Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0459 ATGCACAGAAAGATCTTCATGTCCCCTGTATCAACCACAACAAATAAAACCCAAGAATGTTTTGATTTTTGTGACCCAGCCTGCATTCACAACTGCTACACTTACCCAGGCCACTACTTCTCTCCGCCACGGGCTCCGCCGCCAATTTCACCTCCAAATAATCCGATATCGGCCTACTTAGCCATTGTTGCTTCACTATTCACAGTTGTGTTCGTTCTTGTCGGCTTCTACGTTCTCAAAGTAAAGTGCTACTCCGATTGGTGTGGGCGGAGACGCAATGGATCCTTCAGTACCCAATTAGCGAGGCTTGAGGAAGAGATTCAAGTTGGTCACCCTATCTGGTTGATCACCACCATTGGTTTACAACAATCAATCATAAACTCCATCACGGTTTATAAATACAAAAAAGAAGAGGGATTGATCGAAGGAAGTGAGTGTTCAGTGTGCTTGACTGAATTCCAAGAAAACGAAACCTTAAGAGTATTGCCAAAGTGCAACCACGCATTTCACATCACCTGTATCGACACGTGGCTACGGTCTCATATCAACTGTCCTCTTTGTCGTGCCAATGTTGTCCCCAACAATGCCACTTCCGATGAAACCATCTTAAGTGTGAATTCAGTGGAGGAAAGCTCTAACACGGTGGTGAGAAATGAATCGATTATCGTGGTCTTCGAAAACAGAGAGGGAGCAGGACAAGCAGGGGAAGCCCAAGAGTTCATTCATGAATCAATTTCGAATGTTGATGAGAATGAAGAGATTATAGATGACATAGGAAAAGGAACGAGTTTTGTTTCGATGGATTCTTCTGTTGACCATATAAACGATGACAGTGAACGACGCAGGGTTGATATTGTGAAGAGAGGAGGTGAATGTTCAACGCAGTTTAAATCAGCGCGTCGTTCTTCATTTGCACAATGTCTTCACGTAGCTCCTATTTCCATGAAGAGATCGGTCTCTTACAGCGGGAGGATTGTATCTTCCAGAGGCTACACGAGTGTTAATTCAAATCTTCCCCGCTTAAATTCTCTAACATCGACAACATCAAATGTCTTTTGTACTATCTGA 1068 0.4354 MHRKIFMSPVSTTTNKTQECFDFCDPACIHNCYTYPGHYFSPPRAPPPISPPNNPISAYLAIVASLFTVVFVLVGFYVLKVKCYSDWCGRRRNGSFSTQLARLEEEIQVGHPIWLITTIGLQQSIINSITVYKYKKEEGLIEGSECSVCLTEFQENETLRVLPKCNHAFHITCIDTWLRSHINCPLCRANVVPNNATSDETILSVNSVEESSNTVVRNESIIVVFENREGAGQAGEAQEFIHESISNVDENEEIIDDIGKGTSFVSMDSSVDHINDDSERRRVDIVKRGGECSTQFKSARRSSFAQCLHVAPISMKRSVSYSGRIVSSRGYTSVNSNLPRLNSLTSTTSNVFCTI 355
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0459 355 SUPERFAMILY RING/U-box 127 194 - -
Mibi05g0459 355 SMART ring_2 146 187 IPR001841 -
Mibi05g0459 355 CDD RING-H2_PA-TM-RING 145 188 - -
Mibi05g0459 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 197 IPR013083 -
Mibi05g0459 355 PANTHER RING-H2 FINGER PROTEIN ATL16 53 335 IPR044600 GO:0016567|GO:0016740
Mibi05g0459 355 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Mibi05g0459 355 FunFam RING-H2 finger protein ATL54 121 194 - -
Mibi05g0459 355 Pfam Ring finger domain 145 188 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mibi05g0459 Mibi-ChrMibi05 4379628 4380695 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0459 2 192 C3H Transcription Factor Family AT1G72220 43.636 5.99e-52 176