Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0457 ATGGCGTTATTTCGTATCTCCGCTCTCCCTTCTACAGCTAACCTCTCTGTACAACACCAACTTCTCCCGCTTTCCTCTCTCCCTAATCCTCCTTGTCCCTCCGTCGGCAATACTTCGTTTTGTCGCTCGTCTCCCTCGTTTCATTTTCTACGCCTATCCCTTGCGAATCCCACAAACGATAGAATCAAAGAAACTTCTCATTTTCTGCCAATATTTGCCACTACATCCCAAGAACAAGCGCAGACTTCCTCTCCTTCAAATGTTTCCGATGACACCCAACCAGCTGAGCCACAAGCTGAAGAATTTTCTCGAACCCGGTTGCTTGCTCAGAACCTACCTTGGTCTTCCACTCCTGAAGACGTTCGTTCTTTGTTCCAGAGGCATGGAACAGTCCTAGACGTTGAGTTATCGATGTATAATAAGACTAGAAACAGGGGTTTGGCGTTCGTTGAAATGGGTTCGGAAGAAGAGGCTCGTGCGGCTTTCGATAGTCTCGAATCGTATGAATATGAAGGGCGTATACTGAGACTCGCGTATGCTAGGCCGAAAAAGGAGAGAACTCCACCTCCTGTGCAGCAGAAGACAGTAACATTTAACATATTTGTTGCAAATTTGTCCTATGAAGCGAGGTCCAAAGATCTCAGGGAGTTTTTTGATTCAGGAAGTGGTAGTGTTGTTTCTGCTGAGGTTATATTTCATGACAACCCTAGAAAATCCGCTGGTTATGGATTTGTATCATTCAAGTCTAAAAAAGAAGCTGAGGCTGCCCTTTCTGAGTTCGAAGGGAAGGTTTTTATGGGAAGGCCAATCAGGGTGGCACGTAGTAAGCAGTTTGTTAAACAACCAGTAGAGGAGAGTGCAAGGTCTGAAGATACATCCTCTGAGACCAGCGTAAATGGGGTAGAAGCAGATAAAACTGATTGA 924 0.4545 MALFRISALPSTANLSVQHQLLPLSSLPNPPCPSVGNTSFCRSSPSFHFLRLSLANPTNDRIKETSHFLPIFATTSQEQAQTSSPSNVSDDTQPAEPQAEEFSRTRLLAQNLPWSSTPEDVRSLFQRHGTVLDVELSMYNKTRNRGLAFVEMGSEEEARAAFDSLESYEYEGRILRLAYARPKKERTPPPVQQKTVTFNIFVANLSYEARSKDLREFFDSGSGSVVSAEVIFHDNPRKSAGYGFVSFKSKKEAEAALSEFEGKVFMGRPIRVARSKQFVKQPVEESARSEDTSSETSVNGVEADKTD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0457 307 MobiDBLite consensus disorder prediction 76 102 - -
Mibi05g0457 307 PANTHER OS02G0815200 PROTEIN 39 276 - -
Mibi05g0457 307 Gene3D - 71 186 IPR012677 -
Mibi05g0457 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Mibi05g0457 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 271 IPR000504 GO:0003723
Mibi05g0457 307 MobiDBLite consensus disorder prediction 277 307 - -
Mibi05g0457 307 Gene3D - 187 303 IPR012677 -
Mibi05g0457 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 277 IPR000504 GO:0003723
Mibi05g0457 307 CDD RRM_SF 200 272 - -
Mibi05g0457 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Mibi05g0457 307 SUPERFAMILY RNA-binding domain, RBD 105 274 IPR035979 GO:0003676
Mibi05g0457 307 SMART rrm1_1 199 273 IPR000504 GO:0003723
Mibi05g0457 307 SMART rrm1_1 106 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0457 Mibi-ChrMibi05 4369590 4371358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0457 105 277 Eukaryotic Initiation Factors Gene Family AT3G16380 32.609 9.20e-18 81.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0457 05 4369590 4371358 Mibi05g0457 05 4369590 4371358 ECH