Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0440 ATGGAGCCCTTGGATACAAAATGTACCTCTTATTACCTCCCTTCTTCACGTGATGATCCTACTGATTATTCCAATCATCTTTTGCCTGCCATGAACCGGCCGAGTCATCATCACCATCATCAGCTTCAGCCTCTACCTCTACTGAGCAGTTTCCTCGGTTCAACTCCATTCAGCTCAAAACCCTACCCTACTACGACTCATCATGATGAACAAGATGTTGGTGATGAGGAGGATGTCACAGTGGCCTTACACATAGGACTCCCCCATAATTCCAGTTCTACCCCTGTAGGTCCAAATGGGGTTATTAACGAAGCCCAAGTACCAAGAAATTACTGGATCCCAACCCAAGAACAAATCCTCATTGGATTTAGCCATTTCTCCTGCCCTGTCTGCCTCAAAACCTTCAACCGCTACAACAATCTCCAGATGCATATGTGGGGACATGGATCACAGTATAGAAGAGGGCCAGAGTCGCTGAAAAGAACACATCCAAGGCCGTTGTTGGATATTCCGTGTTATTGTTGCGCCAGAGGATGCAGGAACAACATAGAGCATCCAAGGGCAAGGCCTCTGAAAGATTTTAGGACTTTGCAGACACATTATAAGAGGAAGCATGGAAGCAAGCCTTTTATGTGTCGTAAGTGTGGCAAGACATTGGCTGTGAAGGGAGATTGGCGAACTCATGAGAAGAATTGTGGCAAGCGATGGCTTTGTGTTTGTGGCTCTGATTTTAAACACAAGAGGTCGCTTAAAGACCATATCAAAGCATTTGGCTCTGCTCATTACCCTCTCTCTTCTTCCTACGATGCCATCTGA 816 0.4596 MEPLDTKCTSYYLPSSRDDPTDYSNHLLPAMNRPSHHHHHQLQPLPLLSSFLGSTPFSSKPYPTTTHHDEQDVGDEEDVTVALHIGLPHNSSSTPVGPNGVINEAQVPRNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRTHPRPLLDIPCYCCARGCRNNIEHPRARPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSAHYPLSSSYDAI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0440 271 MobiDBLite consensus disorder prediction 1 40 - -
Mibi05g0440 271 Gene3D Classic Zinc Finger 125 148 - -
Mibi05g0440 271 FunFam zinc finger protein WIP2-like 125 148 - -
Mibi05g0440 271 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Mibi05g0440 271 SUPERFAMILY beta-beta-alpha zinc fingers 194 230 IPR036236 -
Mibi05g0440 271 SUPERFAMILY beta-beta-alpha zinc fingers 121 148 IPR036236 -
Mibi05g0440 271 FunFam Zinc finger protein WIP2 179 261 - -
Mibi05g0440 271 SMART c2h2final6 210 230 IPR013087 -
Mibi05g0440 271 SMART c2h2final6 126 148 IPR013087 -
Mibi05g0440 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 153 IPR013087 -
Mibi05g0440 271 Gene3D Classic Zinc Finger 168 258 - -
Mibi05g0440 271 PANTHER ZINC FINGER PROTEIN WIP2 33 265 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0440 Mibi-ChrMibi05 4230415 4231392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0440 27 263 C2H2 Transcription Factor Family AT1G34790 58.755 1.13e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi05g0440 zf-C2H2_6 7.4e-05 CL0361