Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0439 ATGGCTTACCCACATCACCGATCACAGTTCGGCGACACAACATTCACCAAAGTGTTTGTGGGAGGACTCGCTTGGGAGACTCCCACTGAAGAAATGCGTGAATATTTCGATCAGTTCGGGGACATTCTTGAGGCTGTCATAATCACAGATAAGAACACTGGAAAATCTAAAGGCTATGGATTTGTAACATTCCGTGATCCAGAATCGGCCAGAAGGGCTTGCGCTGATCCAAACCCAATTATAGACGGAAGAAGAGCCAACTGTAACATTGCTTCTCTTGGACGTCCCCGACCTTCTCCACCTCGAGGGAGGAATACATTTCAAGGCGGAAGCACATCACATAGTGCAGGTGCAGCATCATATGGTGGTGCTCCGGCGGCAGTTCCGCCGCCGCCTCCTCCTCCTCCGGCGGCGGGGCCTGGGATAATGTACCCGCCATATGGATACTCTCCCTACTCTCCTGATTACGGGTACCACCAAGCAGCATTGTACAACCCACAGATTCAGCAGCCACATCAATACTACCAGCAAGCATATGGAGCTTCATCATCAGGTGTGAGTTCCCCATATTACTACGGCGGTTATTCTGTGCAGCCACCCAGAGCATCTTATCCTACACCCCAACCTCATCGGCTGCCACCTGGATCCCCCTATGTGTACTACCCCTATCCTTCACCTCCACCTGCAACTCCACCGGTAGATCTCTCCTTCGCTGCATATCGTCCCCCACGACAACCCATAATAGTAAGGCAGACCTTCCCTTCATCATCTACTGATACACAGTCACAGACTCAGCAGCGTACTTCCTCCTCCGAGACTGCGGCCGGAGTAGTTACGGCGGCGGCTTCATCGGAAAGTCCGAATAGCCAAGGGAAAAACTAA 882 0.5204 MAYPHHRSQFGDTTFTKVFVGGLAWETPTEEMREYFDQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPIIDGRRANCNIASLGRPRPSPPRGRNTFQGGSTSHSAGAASYGGAPAAVPPPPPPPPAAGPGIMYPPYGYSPYSPDYGYHQAALYNPQIQQPHQYYQQAYGASSSGVSSPYYYGGYSVQPPRASYPTPQPHRLPPGSPYVYYPYPSPPPATPPVDLSFAAYRPPRQPIIVRQTFPSSSTDTQSQTQQRTSSSETAAGVVTAAASSESPNSQGKN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0439 293 CDD RRM_RBM24_RBM38_like 16 91 - -
Mibi05g0439 293 PANTHER BOULE-RELATED 7 267 IPR037366 -
Mibi05g0439 293 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Mibi05g0439 293 MobiDBLite consensus disorder prediction 90 134 - -
Mibi05g0439 293 Gene3D - 2 111 IPR012677 -
Mibi05g0439 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Mibi05g0439 293 MobiDBLite consensus disorder prediction 104 118 - -
Mibi05g0439 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Mibi05g0439 293 MobiDBLite consensus disorder prediction 246 293 - -
Mibi05g0439 293 MobiDBLite consensus disorder prediction 249 293 - -
Mibi05g0439 293 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Mibi05g0439 293 SMART rrm1_1 17 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0439 Mibi-ChrMibi05 4225718 4228849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0439 12 92 C2H2 Transcription Factor Family AT2G19380 38.272 1.61e-14 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0439 05 4225718 4228849 Mibi05g0439 05 4225718 4228849 ECH