Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0416 ATGGCAGCTAACAGTAATCCGCTAATTCAACCGGATCCTTTCAACGGTGAGCTCATGGAAGTACTCGAACCTTTTATGAAAAGTGCTTCCTCAACACCCTCACCTTCTCCTTCTTCCAGTACATTCCCACCTTCCCAACCTCCCTCTTCCAATTTCCCTCATTACCCCTCTCCTTCATTCCCTACACAGCCCAATTGGTTTGCTGGTGGAAGCTCCACATCGATGGCCCCTCTATTTTCCGACGGGTTATTCAACAACCAAAGCTTCATTGGTTTCGAGCAGCAGCCAAATCTCCCTTTTGGGTTCAACAACCTTACTCTCTCTCAAACCAACCATATTCAGCCCCCAACCCTTCACCAGAATCACCAAGACATGACCTTTCAGCAAAACACCCTCAGCTTCTTGACCCCCAAGCCTGTTCCCATGAAGCAAATGGGTGCACCTTCTAAACCCACCAAGCTTTACAGAGGTGTCAGGCAGAGGCATTGGGGAAAATGGGTCGCCGAGATCCGTCTTCCAAAGAATCGAACCCGACTCTGGCTTGGAACCTTCGATACTGCCGAGGAAGCTGCTCTTGCATACGACAAGGCCGCTTACAAACTCAGAGGTGACTTTGCTAGGCTTAACTTCCCAAATCTCCGTCACCAAGGTTCCAGTGTTGAAGGTGAATTTGGAGAGTACAAGCCTCTTCATTCCTCTGTTGATGCCAAGCTTCAGGCAATTTGTGAAAGCATGGCTGAAATGCAGAAGCAGGGGAAGTTGGAGAAGACAAAGAGGTCTTCAGGGAAGTCCAAGTTGGGTTCAAAGGCTGCTCCGCCGCAGACGGTGGCGCTCTCCGATGAGCCGCCGGTGGCCGGTGAAGCTGATTTGAAGGGAGCGGAGAATTCATACATCAAGGCCGAGAGTTCTTCGTCTCCGGTGATGACTGAGAGTGGCGACTCTGGTGGTTCTTCTCCTCTGTTAGATTTGACATTTGGCGATGTTGGTGAGCCTCAGTGGGAAAGTATGGCAGAAATTTTTAATCTGCAGAAGTACCCTTCTGAGATCGACTGGGCATCGTTATGA 1065 0.4995 MAANSNPLIQPDPFNGELMEVLEPFMKSASSTPSPSPSSSTFPPSQPPSSNFPHYPSPSFPTQPNWFAGGSSTSMAPLFSDGLFNNQSFIGFEQQPNLPFGFNNLTLSQTNHIQPPTLHQNHQDMTFQQNTLSFLTPKPVPMKQMGAPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVEGEFGEYKPLHSSVDAKLQAICESMAEMQKQGKLEKTKRSSGKSKLGSKAAPPQTVALSDEPPVAGEADLKGAENSYIKAESSSSPVMTESGDSGGSSPLLDLTFGDVGEPQWESMAEIFNLQKYPSEIDWASL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0416 354 CDD AP2 153 213 IPR001471 GO:0003700|GO:0006355
Mibi05g0416 354 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
Mibi05g0416 354 Pfam AP2 domain 155 203 IPR001471 GO:0003700|GO:0006355
Mibi05g0416 354 PRINTS Ethylene responsive element binding protein signature 177 193 IPR001471 GO:0003700|GO:0006355
Mibi05g0416 354 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Mibi05g0416 354 MobiDBLite consensus disorder prediction 1 57 - -
Mibi05g0416 354 ProSiteProfiles AP2/ERF domain profile. 154 211 IPR001471 GO:0003700|GO:0006355
Mibi05g0416 354 SMART rav1_2 154 217 IPR001471 GO:0003700|GO:0006355
Mibi05g0416 354 FunFam Ethylene-responsive transcription factor 2 153 212 - -
Mibi05g0416 354 MobiDBLite consensus disorder prediction 249 326 - -
Mibi05g0416 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 354 - -
Mibi05g0416 354 MobiDBLite consensus disorder prediction 37 57 - -
Mibi05g0416 354 Gene3D AP2/ERF domain 154 212 IPR036955 GO:0003700|GO:0006355
Mibi05g0416 354 MobiDBLite consensus disorder prediction 297 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0416 Mibi-ChrMibi05 4005921 4006985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0416 16 354 AP2-EREBP Transcription Factor Family AT1G78080 50.824 5.48e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi05g0416 AP2 8.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2299 08 40732936 40733928 Mibi05g0416 05 4005921 4006985 CCT
Mibi05g0416 05 4005921 4006985 Mibi05g0416 05 4005921 4006985 ECH