Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0375 ATGCAAGCACATTCTAATCAGACGGCATCTCCTATGAAATGTAACCTGAGCCAGAGGATAAGCTTCTTGCCTTCTGGACGAGCCTTCTCTTCTCGTCTTCTGCAGCAGGTGGACAAGAGTGGGAAAATGGCGCAAACGTTAGCAATGCCTGTAGCTCCTTCTCTTTCTGTTATTTCCGATCCTCACGCTTCAAGCTCGTTTTCAAGAAGCGTCTCTTTCCGATTAATGAACCCTCCTAAGGTTCAAGGGCTAAGCATCCAATGTGTTCGTGTTGGAGGTGTAGAGATCCCAAACAACAAGCGAATTGAGTTCTCGCTCCAGTACATACATGGAGTTGGACGAAGCAGGGCTCGAAAAATCCTCTGCGACTTAACCATGGAAAACAAAATCACAAAGGACTTGAATGAGGAGGAACTCATCACTCTAAGAGATGAAGTCTCCAAGTACATGATTGAAGGCGATTTGAGGAGGTTCAATGCACTCAATATAAGGAGATTGAAGGAGATTCAATGCTACAGAGGAATCAGACATATTCAGGGGCTGCCCTGTAGAGGACAACGCACCAAGAACAATTGCCGGACCTTGAAGGGGAAGAAGGTTGCCATTGCAGGGAAGAAGAAGAAGTAA 627 0.4593 MQAHSNQTASPMKCNLSQRISFLPSGRAFSSRLLQQVDKSGKMAQTLAMPVAPSLSVISDPHASSSFSRSVSFRLMNPPKVQGLSIQCVRVGGVEIPNNKRIEFSLQYIHGVGRSRARKILCDLTMENKITKDLNEEELITLRDEVSKYMIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0375 208 Hamap 30S ribosomal protein S13 [rpsM]. 88 204 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mibi05g0375 208 FunFam 30S ribosomal protein S13 158 207 - -
Mibi05g0375 208 Gene3D - 89 157 - -
Mibi05g0375 208 ProSitePatterns Ribosomal protein S13 signature. 173 186 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mibi05g0375 208 ProSiteProfiles Ribosomal protein S13 family profile. 91 197 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mibi05g0375 208 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 82 206 - -
Mibi05g0375 208 TIGRFAM uS13_bact: ribosomal protein uS13 90 199 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mibi05g0375 208 Pfam Ribosomal protein S13/S18 90 194 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mibi05g0375 208 SUPERFAMILY S13-like H2TH domain 89 200 IPR010979 GO:0003676
Mibi05g0375 208 Gene3D 30s ribosomal protein s13, domain 2 158 208 IPR027437 -
Mibi05g0375 208 FunFam 30S ribosomal protein S13 76 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0375 Mibi-ChrMibi05 3664433 3668997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0375 87 206 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.822 6.66e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0375 05 3664433 3668997 Mibi05g0375 05 3664433 3668997 ECH