Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0352 ATGTCTCTGAGCCCTCCTCGAAGAAATGGAGAAAGCAGGACGAACCCCTTGTATTGGTGCTTCCAGTGCAACCGAACGGTCCGTCTTCCCTCCACAGATTCATCCAACATCACATGCCCTCTCTGTTCAGGCCAATTCCTCTGTGAAATCTCCGTACCAATACCTGCACTACTCTTCGATTTCAGCGACCCTGATCCATCACCACAATCCCGTTTGGTAGAAGCCCTTTCTCTGTTTGACTTTGACCCCCCAATCAGGCAATTCAATGGCACACGTCATGCTGATTCCGATGGTGAAATTCCCGTCCGTCGTGTAAACGGTCGACGCCGTCGCTGGTATGTCCCTGATCCCGATGTTCCAATAGTTGACATTCGTCCTCGCCTTCGTACTGGACCTTGGCTCATTCTTCCACCCATAGATCCGTCTGAACCATTGGAATTCATTCCCCAACGACGACTTCGACGACAGAACAATATACCTCCTGGTGTTGACCCCAGAGACTACTACTTGGGTCGTGGTTTGGCGGAATTGATAGATGAGCTCACCCAAAATGACAGGCCAGGGCCACCGCCGGCTCCGGAGAATGCAATCAATGCGATTCCAAGTGTGAAGATATCGGAGAGCCATCTGAAGGAGAATTCGTACTGCCCGGTTTGTCAGGAAGAGTTTCAATTGGGTGGCGATGCTAGGGAATTGCCATGTAGGCATATATATCATTCTGATTGCATTGTTCCTTGGTTAAGGCTTCACAATTCTTGCCCTGTTTGCCGCCTTGAGGTGCCGGTGCCGGAGGAATCCGGTGAACCCGGTGGCGGAGGAGGAGGTAGGCTGAGGAGGTGCTTGAGATGGAGTCAGATTCAATTGGCTTCTTTGTGGCCTTTCCATGGGAGGCATCGACGCGTTCGTCCTGAAGCAGAGAATAATGTGATTGCTTCTACTGCAACAACGGGTGATAACATAAATCCTTTCTTCCATAACTATACTTCATTAAATAGAAATGACCCGACACTCTTATATGCAAATGGATAG 1029 0.4976 MSLSPPRRNGESRTNPLYWCFQCNRTVRLPSTDSSNITCPLCSGQFLCEISVPIPALLFDFSDPDPSPQSRLVEALSLFDFDPPIRQFNGTRHADSDGEIPVRRVNGRRRRWYVPDPDVPIVDIRPRLRTGPWLILPPIDPSEPLEFIPQRRLRRQNNIPPGVDPRDYYLGRGLAELIDELTQNDRPGPPPAPENAINAIPSVKISESHLKENSYCPVCQEEFQLGGDARELPCRHIYHSDCIVPWLRLHNSCPVCRLEVPVPEESGEPGGGGGGRLRRCLRWSQIQLASLWPFHGRHRRVRPEAENNVIASTATTGDNINPFFHNYTSLNRNDPTLLYANG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0352 342 Pfam Ring finger domain 215 257 IPR001841 -
Mibi05g0352 342 FunFam E3 ubiquitin-protein ligase RING1-like 180 263 - -
Mibi05g0352 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 152 261 - -
Mibi05g0352 342 SUPERFAMILY RING/U-box 196 263 - -
Mibi05g0352 342 SMART ring_2 216 256 IPR001841 -
Mibi05g0352 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 263 IPR013083 -
Mibi05g0352 342 Pfam zinc-ribbon 18 50 IPR039525 GO:0061630
Mibi05g0352 342 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Mibi05g0352 342 CDD RING-H2_RNF126_like 216 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0352 Mibi-ChrMibi05 3422102 3423130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0352 188 294 C3H Transcription Factor Family AT1G68180 43.119 7.31e-26 102