Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0309 ATGACTGTGCAAGCTGCTGACCATGCGCAAGCAGCCTCGATGACCTGGGGCTTCTCTCATGTTTTGCTGATGAGTTTCCTGAGGCCTTCAGCATTGTACGCTTTTCTTATTTCATGTACTTCCTCCAGATGGATGCCTTGTCAGAGTTGGGGCTTTCTTCGATGGCCCGGATTCGATGGCTTCTTGAGACTCTTGGTGATGTTCCTTCTCTGGACTATGTTTTTGGAGCTTCGCTTCATACCTTCCTCTTCTATGCACCCAACTCTTACAGTTGGTGATCGAATTATCGTCGAGAAGGCTTCATATTACATCAGGAGTCCTGCTGTACAAGATATTGTATTATTCCGAGATCCAACCAAGCTACCTGGAGACAAAGCAGCGGATATATTTATAAAGAGAGTTGTTGCAAAAGCAGGAGATTTTGTTGAGGTTCGTCATGGGTCTCTTTATATCAATGGTGTTGCTCAGATGGAAGATTATGTAGCAGCTCAGCCAACATACACAACAAACTTAACTTATGTTCCAAACGGTCATGTTTATGTATTAGGTGACAATCGAAACAACAGCTATGATTCTCATATGTGGGGACCACTGCCTGTCAAAAACATAGTGGGGAGACATGTCATGCGTTGTCAGAGACCCACAAACATCTGA 654 0.4419 MTVQAADHAQAASMTWGFSHVLLMSFLRPSALYAFLISCTSSRWMPCQSWGFLRWPGFDGFLRLLVMFLLWTMFLELRFIPSSSMHPTLTVGDRIIVEKASYYIRSPAVQDIVLFRDPTKLPGDKAADIFIKRVVAKAGDFVEVRHGSLYINGVAQMEDYVAAQPTYTTNLTYVPNGHVYVLGDNRNNSYDSHMWGPLPVKNIVGRHVMRCQRPTNI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0309 217 ProSitePatterns Signal peptidases I serine active site. 82 89 IPR019756 GO:0004252|GO:0016020
Mibi05g0309 217 TIGRFAM sigpep_I_bact: signal peptidase I 62 210 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g0309 217 Gene3D Umud Fragment, subunit A 82 214 - -
Mibi05g0309 217 PRINTS Bacterial leader peptidase 1 (S26A) family signature 73 89 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g0309 217 PRINTS Bacterial leader peptidase 1 (S26A) family signature 174 193 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g0309 217 PRINTS Bacterial leader peptidase 1 (S26A) family signature 130 142 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g0309 217 SUPERFAMILY LexA/Signal peptidase 72 211 IPR036286 -
Mibi05g0309 217 FunFam Peptidase/ serine-type peptidase 82 211 - -
Mibi05g0309 217 CDD S26_SPase_I 76 206 IPR019533 GO:0004252|GO:0006465
Mibi05g0309 217 Pfam Signal peptidase, peptidase S26 62 209 IPR019533 GO:0004252|GO:0006465
Mibi05g0309 217 PANTHER SIGNAL PEPTIDASE I 59 214 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi05g0309 217 ProSitePatterns Signal peptidases I signature 3. 179 192 IPR019758 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0309 Mibi-ChrMibi05 3058756 3063021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0309 82 210 MADS-box Gene Family AT1G29960 29.457 6.91e-08 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0309 05 3058756 3063021 Mibi05g0309 05 3058756 3063021 ECH