Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi05g0301 | ATGCTGCGAACGAAGGCATTCGATGGCGCCAATGTGTTCATGTCACGGAACCTCGTGCCGCCTGAAGTCTTCGACACACTTCACGACGCGCTTAAGAATAACGGTGCCCATGTCCAACTTTGCTGCGACCCTTCGCGCAATGGGCCTCACGATTATCACATTATATCTCACGATCATGAGAAACTTCAGGATCTTAAAGCCAGGGGTTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGATCAAAGACCTCTGCCTAAGCAGGGTTTCACTTGTTGCCTAGCCATGGATGGTGTAAAATTACTTGCATCTGGCTTTGATATCGATGAGAAGATGAAGATAAAAGAGTTAGTAAATTCTATGGGAGGAATTCTTCATACTAAAGCATCGCTGGATGTAAACTTTGTGATTGTGAAAAGTGTTTTAGCTGCCAAGTACAAGTGGGCTTTGAATATGCTGAAGAAACCAATAATCACTTTTAATTGGTTAAAGCAATGCTCTATTGAGCATCGCATTGTTCCTCAAGAGTCGTACAGGATTCTTCCCTTTTCTGGCTTGACAATTTGTGTTACCCGAATCCTGGCAGATGAGCGCAGAAAAATGGAGATGATTATTGTACAGAATGCTCCTGAAGGTGACAAATTTAAGGTGGCGAAACGATGGGGTCACATTCACATTGTGACAAAGAAATGGTTTGATCAGTCTATTGCTAGAAGAGCATGTCTGAATGAGGAGTCTTACCCTGTTCAACATGGACCTGTATCCTCACAAAGAATGTCTATGGATAATTTAAGAGCACAACATAGTCAGGAAAAGGAAAACGGGAAATTGCAATCGGCAGCATCATCTGGCGTTCCAGATTCATTTATGCCTGCCATTTCCTGTGCTGAGCTTGTGGACGGGGATCCAGATGCTACACAGTCAGAAAACACTTCTGCTGCCGTTTTTGATGTTCCTGTCTGTGTTAGTGGGACAGATCCTGAAGCACCTCGAGTGCAACCCAAAAATGAACCAAACCTTGATGATGCTGTAGCCAGAGATTCGGAATCTGATGATAATGATTTGTACTTATCAGAGTGCAGAATATCACTTGTTGGCTTTGAAGCTTCTGAAATGCGTAAGCTAGTTAATATGGTTCGTAAAGGAGGAGGATCCAGATATATGTCTCTAAATGACAAGTTGACACACATAGTCATTGGAACCCCTTCGGAAATAGAAAAGAAGGATGTAAGGAGCCTTGCTGCTTTGGGTATGATCTACGTTGTTAAAACTACATGGATTGAAGATTGTGACCGTGGAAAGAAAGAAGTCCCTGTTCTTAAGAGACACATTGCACAAGATCTTCTTCTCCCAAAAGGTTCAGCATCTTTTGTGAAAGGAGCTGTAACTGGAATGATGGGCGCAAATAAAGGTAAAGGCCCCGGCAGTCATCAAAGCCTGCAGGCCGATCAGGTGATAACTGGTATGGACTCTAAAGTTGTTATGTCGTTATCTGTGGAGAAAAAAGAAGAAAAGAAGCCAGAGATTGATGTGACTGAGCAAACCTTTCTTAAATCAATGGACAAGTCAACTCAGCAAACACAACCTTCTATTAAAAATGATAAGATGAAGGGTCAAAAGAAGATGCGTAATGAATCTTCTCAGTGTGTGAGGTCATCAACGGTTTTCAGGGGGATGAAGTTTTGTTTTTCAAATTCTTTTCCTGAAGAGAGAAGAGATGAGATTATTCAATGGATAAGTCAAGGGAAAGGAGAAATAGTAAACGGGCTCAGGAAACAGAATGCCCACTATACTATTGAGTGTCATGGTGTAACAAGAAGGTTGGAAGAAATTTCCCAAACTACATATATTTCCAGTCATTGGATACGATCTTGTTTAGAGAATGACTGCTTGCTGGATGTTGATAGTCACATTCTTTATTCTCCTCTCCCTTGCCGTATACCCTTGCCTGGGTTTGAGAGCTTTCGGTTTTGTGTTTCTCAATACGAGGGGAAAGACAGAATGCTGCTAAGGAATCTGTGCTTTGTTCTCGGAGCTAAATTTGTGGAGAAGTTGACAAAGAAAGTTACACATTTATTGTGTGAATTCATCAATGGGCCCAAGTATGAGGCTGCTTGTAAGTGGGGGATCCAGACGGTTACCTCTGAATGGATATTGGAATGTGTCAAACAGAACAAGGTTGTTGCTGTTGATCAATTTTTACCCAAAGAAGTCTCTGTTCATGATCAAAAGAATCAAGAGGCTGGAGTTTTTATTGTGAGTCAATTTCCTAACCCGGCTCACAGTACAAGTGGGGACAGCTCTGCCCAGTTTTCAAGTCGATCACAAAATTTAAGAAACATACGGAATCAAAAGGTTGGTAGTCAAGTCGACACTCATGGGGTTGGTGCTACAATATCAAGTGTTTACTGCAAGAAGGCAAAGCTTTTGGGTGAATCTGGTCTGTATGATATAATGCCTTCTGATGTAGCTTCAGCTACCCCTATGTACGATATGAGTTCAACAGGAAACAATATGCTAATAGATACTGGTGAGATTTCTCCGGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGCAAGATGCATGATCAGACATCCCCAGGGAAGACCGCGAATAAGGGAAATAAATTTTTGTCTGATTGTTCTGTTCTTGGTGAAAACCAATCAAATCCTCATACTACCATTGGATTTTCTGAACACTGGCTAAAAAGAAGTAGCAGAAACGAGGAGAATGATGATGCTTCTCGAGATGGAAGAGCTGCTAATGATAATTTTAGTGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCTGGAAGACAAATGCTAATCGACAGAATCCGAACGCGTAGTAGTATGGCTTAA | 2904 | 0.417 | MLRTKAFDGANVFMSRNLVPPEVFDTLHDALKNNGAHVQLCCDPSRNGPHDYHIISHDHEKLQDLKARGCNLLGPQCVLSCAKDQRPLPKQGFTCCLAMDGVKLLASGFDIDEKMKIKELVNSMGGILHTKASLDVNFVIVKSVLAAKYKWALNMLKKPIITFNWLKQCSIEHRIVPQESYRILPFSGLTICVTRILADERRKMEMIIVQNAPEGDKFKVAKRWGHIHIVTKKWFDQSIARRACLNEESYPVQHGPVSSQRMSMDNLRAQHSQEKENGKLQSAASSGVPDSFMPAISCAELVDGDPDATQSENTSAAVFDVPVCVSGTDPEAPRVQPKNEPNLDDAVARDSESDDNDLYLSECRISLVGFEASEMRKLVNMVRKGGGSRYMSLNDKLTHIVIGTPSEIEKKDVRSLAALGMIYVVKTTWIEDCDRGKKEVPVLKRHIAQDLLLPKGSASFVKGAVTGMMGANKGKGPGSHQSLQADQVITGMDSKVVMSLSVEKKEEKKPEIDVTEQTFLKSMDKSTQQTQPSIKNDKMKGQKKMRNESSQCVRSSTVFRGMKFCFSNSFPEERRDEIIQWISQGKGEIVNGLRKQNAHYTIECHGVTRRLEEISQTTYISSHWIRSCLENDCLLDVDSHILYSPLPCRIPLPGFESFRFCVSQYEGKDRMLLRNLCFVLGAKFVEKLTKKVTHLLCEFINGPKYEAACKWGIQTVTSEWILECVKQNKVVAVDQFLPKEVSVHDQKNQEAGVFIVSQFPNPAHSTSGDSSAQFSSRSQNLRNIRNQKVGSQVDTHGVGATISSVYCKKAKLLGESGLYDIMPSDVASATPMYDMSSTGNNMLIDTGEISPAVPDVAAAIEDLLEQTSKMHDQTSPGKTANKGNKFLSDCSVLGENQSNPHTTIGFSEHWLKRSSRNEENDDASRDGRAANDNFSETQTESQVVGYEEDLSGRQMLIDRIRTRSSMA | 967 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi05g0301 | 967 | CDD | BRCT_TopBP1_rpt2_like | 653 | 728 | - | - | |
| Mibi05g0301 | 967 | MobiDBLite | consensus disorder prediction | 523 | 547 | - | - | |
| Mibi05g0301 | 967 | SUPERFAMILY | BRCT domain | 185 | 253 | IPR036420 | - | |
| Mibi05g0301 | 967 | MobiDBLite | consensus disorder prediction | 930 | 945 | - | - | |
| Mibi05g0301 | 967 | MobiDBLite | consensus disorder prediction | 327 | 353 | - | - | |
| Mibi05g0301 | 967 | ProSiteProfiles | BRCT domain profile. | 99 | 183 | IPR001357 | - | |
| Mibi05g0301 | 967 | SUPERFAMILY | BRCT domain | 58 | 183 | IPR036420 | - | |
| Mibi05g0301 | 967 | Gene3D | BRCT domain | 551 | 648 | IPR036420 | - | |
| Mibi05g0301 | 967 | ProSiteProfiles | BRCT domain profile. | 195 | 252 | IPR001357 | - | |
| Mibi05g0301 | 967 | ProSiteProfiles | BRCT domain profile. | 355 | 447 | IPR001357 | - | |
| Mibi05g0301 | 967 | Gene3D | BRCT domain | 97 | 184 | IPR036420 | - | |
| Mibi05g0301 | 967 | Gene3D | BRCT domain | 650 | 741 | IPR036420 | - | |
| Mibi05g0301 | 967 | Gene3D | BRCT domain | 340 | 444 | IPR036420 | - | |
| Mibi05g0301 | 967 | SUPERFAMILY | BRCT domain | 556 | 644 | IPR036420 | - | |
| Mibi05g0301 | 967 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 9 | 965 | - | - | |
| Mibi05g0301 | 967 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 556 | 639 | IPR001357 | - | |
| Mibi05g0301 | 967 | FunFam | Transcription coactivator | 337 | 447 | - | - | |
| Mibi05g0301 | 967 | SMART | BRCT_7 | 556 | 632 | IPR001357 | - | |
| Mibi05g0301 | 967 | SMART | BRCT_7 | 96 | 173 | IPR001357 | - | |
| Mibi05g0301 | 967 | SMART | BRCT_7 | 4 | 85 | IPR001357 | - | |
| Mibi05g0301 | 967 | SMART | BRCT_7 | 652 | 728 | IPR001357 | - | |
| Mibi05g0301 | 967 | SMART | BRCT_7 | 357 | 437 | IPR001357 | - | |
| Mibi05g0301 | 967 | ProSiteProfiles | BRCT domain profile. | 655 | 738 | IPR001357 | - | |
| Mibi05g0301 | 967 | Gene3D | BRCT domain | 185 | 256 | IPR036420 | - | |
| Mibi05g0301 | 967 | CDD | BRCT_TopBP1_rpt2_like | 185 | 242 | - | - | |
| Mibi05g0301 | 967 | Gene3D | BRCT domain | 45 | 93 | IPR036420 | - | |
| Mibi05g0301 | 967 | FunFam | Transcription coactivator | 96 | 184 | - | - | |
| Mibi05g0301 | 967 | MobiDBLite | consensus disorder prediction | 911 | 929 | - | - | |
| Mibi05g0301 | 967 | MobiDBLite | consensus disorder prediction | 897 | 954 | - | - | |
| Mibi05g0301 | 967 | CDD | BRCT | 102 | 169 | - | - | |
| Mibi05g0301 | 967 | SUPERFAMILY | BRCT domain | 352 | 440 | IPR036420 | - | |
| Mibi05g0301 | 967 | ProSiteProfiles | BRCT domain profile. | 554 | 642 | IPR001357 | - | |
| Mibi05g0301 | 967 | SUPERFAMILY | BRCT domain | 651 | 739 | IPR036420 | - | |
| Mibi05g0301 | 967 | Pfam | BRCA1 C Terminus (BRCT) domain | 104 | 169 | IPR001357 | - | |
| Mibi05g0301 | 967 | Pfam | BRCA1 C Terminus (BRCT) domain | 357 | 433 | IPR001357 | - | |
| Mibi05g0301 | 967 | Pfam | twin BRCT domain | 659 | 720 | IPR001357 | - | |
| Mibi05g0301 | 967 | FunFam | Transcription coactivator | 551 | 648 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi05g0301 | 1 | 967 | Core DNA Replication Machinery Family | AT1G77320 | 49.177 | 0.0 | 889 |