Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0297 ATGCATAGAAATGCATTAAGAAAAGTTAAGGACTTCTTGCACTCAAGAAGATCACCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGGAGGGGTAAGATTGAGATCAAGAGAATAGAGAACTCAAGCAACAGGCAAGTGACATACTCAAAGAGGAAGAATGGGATACTGAAGAAGGCGAAGGAAATTACTGTTCTTTGCGATGCCCAAGTTTCCCTTATTATCTTTGCTGCTTCTGGAAAGATGCATGAATACATCAGCCCTTCCACCACGTTGATTGACATTCTAGAAAGATATCATAAAGCGTCTGGGAAAAGGCTTTGGGACGCTAAGCACGAGGACTTGAACAACGAAATTGATAGGCTCAAGAAAGAGAACGACAGCATGCAGATTGAGCTCAGGCATTTGAAGGGAGAGGATGTGAACACGCTTAATTACAAGGAGTTGATGGCCTTAGAGGATGCCTTAGAATGTGGCCTCGTCGGTATACGCCAGAGACAGATGGAGATTTACCGAGCACACAGAAGAAATGGCAAGATCTTGGAGGAAGAGAACAGGGAGCTTAATTTTATACTGCAACAACGTTTGGTAATGGAAGGAGCGAGAGAATTGGAGAATGGATTTGATGAGAGCTTAAGGGAGTTCCATTCCCAAATGCCATTCGCCTTCCGTGTGCAGCCTATGCAGCCTAATCTTCACGAGAGGATGTGA 714 0.4454 MHRNALRKVKDFLHSRRSPGEREREREREMGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHEYISPSTTLIDILERYHKASGKRLWDAKHEDLNNEIDRLKKENDSMQIELRHLKGEDVNTLNYKELMALEDALECGLVGIRQRQMEIYRAHRRNGKILEEENRELNFILQQRLVMEGARELENGFDESLREFHSQMPFAFRVQPMQPNLHERM 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0297 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 86 IPR002100 GO:0003677|GO:0046983
Mibi05g0297 237 MobiDBLite consensus disorder prediction 11 31 - -
Mibi05g0297 237 ProSitePatterns MADS-box domain signature. 32 86 IPR002100 GO:0003677|GO:0046983
Mibi05g0297 237 ProSiteProfiles MADS-box domain profile. 30 90 IPR002100 GO:0003677|GO:0046983
Mibi05g0297 237 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Mibi05g0297 237 Coils Coil 106 140 - -
Mibi05g0297 237 Gene3D - 42 126 IPR036879 GO:0003677|GO:0046983
Mibi05g0297 237 Pfam K-box region 111 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi05g0297 237 ProSiteProfiles K-box domain profile. 113 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi05g0297 237 CDD MADS_MEF2_like 34 109 IPR033896 GO:0000977|GO:0045944
Mibi05g0297 237 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Mibi05g0297 237 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Mibi05g0297 237 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Mibi05g0297 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 30 232 - -
Mibi05g0297 237 MobiDBLite consensus disorder prediction 1 31 - -
Mibi05g0297 237 SUPERFAMILY SRF-like 31 125 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0297 Mibi-ChrMibi05 2932304 2941731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0297 30 172 MADS-box Gene Family AT5G20240 67.133 2.52e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi05g0297 K-box 7e-18 No_clan