Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0289 ATGGAAACTGAGGAGGGAACGAGCAATAGGGATAACACAGAATGCTCTGAAGCGGTTCAGTGCCCCAAGAGTGAAGCTGTAAATAATGGGTTTGCGGATAGCAATGATGTTAATAGAGGGGTTCAGCGCTTTAATTGTGAAGCTGTGAATAATGGGGTGGTAATTGCAGACAGGAATGATGTTGCTCAAGGGGACTCTGGTGCGGTCGAAAGCTTTCGAACTTACCAGAGACGTAAGCGTTCAATTTTGAATTCAGAAAGCAAAGCTCAAGAAGATTGCCGAACACACTCAGAAGCTGCAAGTCACATAGAAAGCCAGGGTATAAAGAAACCATGTAATGTAGCTGTAGGAAATACTTCAGATAAACATTTACATGCACATTGGGGAAATGTCGTACTAATGCATCTGTATCAGTCACTAGGTGATGATAAAGGTGGAATAGAAGGGTGCATTAGGGAAGCTCTCATGCTTCATGCTAAAACTAGTTCTGCCACTACTTTAAAGGAAACTTGTAAAATTGGCAAAGTTGGACAAGATTACTCTCCACACTTTGAGTTGATGTCTCATAGATTACAAGAGGAAGTTCATGGGTATGCAAATGTCTTGTGCAATGGATCTTGTAACGAGTCAGATGGTCCTGATGCAAATGAGATGTGTCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTGCTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAACAAGCTTATGAACAGTCACCCACACTTTTTTTGTCAGATATTCAACAGGTTTGGAGAAAACTTCAAGACACTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATGTCGAGAATATGCTGTGAGCAGGCTGGAGTTTCAGTGCATGGCACATTCAAAGATGGGAAGCAGGAAGAATCTGATTGTCACATGAAACCGGAGCAGACAGAAGACTGTGGCATGTATAAGACTTGCACTTGCAGGCACTGTGGAAACAAAGCAGATGGGAAAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTTCCATATCTCCTGTATTGAGCCTCCTGTCAAAGAGATACCCCATAAGAGCTGGTACTGTGCCGAATGCACTGCTAGTGGAATCGGATCTCCACATGAAAACTGTGTGGTATGTGAAAGGTTGAATGACTCAAAGACCGTGAACTTTGATGAAAGCTTTCCTGTAAATGAGGAAACAGTTAATGAATTGGAAGAGAATTCAAATTGCACCTTTGATGGGGCTTTAGCATCTAGAAGGGGGAAAATTGACATGATCTGCAAAGTTTGTAAAAATGAAGTGGATGGTGAAAGAATTAAAATCTGTGGTCACCCCGACTGCTCTAAGTACTATCATGTGAGGTGTTTGACAAGTAAACAGTTAACATCCTATGGTCCCCGTTGGTACTGCCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATAATCAGATTGTTCTGTGTGATGGCTGTGATGATGGATACCACATATATTGCATGAAACCTCCCCGAACTTCTATTCCCAAAGGAAATTGGTTCTGCAGAAAATGTGATGCTGGGTTACAAGTAATACGACGGGCGAAAAAGTTATATGAGAATGAGAGTAAAAGGCAGAGAAAAACAAGTGAAGATGGTTCAAAACCAGGCGACAGATTTGAAAAAAAATGGAATGATAAACATGGACGAGATTTGGATAAAGTTGGAGGAATGGACATGCTTTTAACTGCAGCTAATACTTTGACTTTGGAAGAGGACTTGGCTGCAATCCGGAAGTAG 1857 0.4125 METEEGTSNRDNTECSEAVQCPKSEAVNNGFADSNDVNRGVQRFNCEAVNNGVVIADRNDVAQGDSGAVESFRTYQRRKRSILNSESKAQEDCRTHSEAASHIESQGIKKPCNVAVGNTSDKHLHAHWGNVVLMHLYQSLGDDKGGIEGCIREALMLHAKTSSATTLKETCKIGKVGQDYSPHFELMSHRLQEEVHGYANVLCNGSCNESDGPDANEMCQRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDFSVINSRLKEQAYEQSPTLFLSDIQQVWRKLQDTGNEIVSLAKGLSNMSRICCEQAGVSVHGTFKDGKQEESDCHMKPEQTEDCGMYKTCTCRHCGNKADGKDCLVCDSCEEMFHISCIEPPVKEIPHKSWYCAECTASGIGSPHENCVVCERLNDSKTVNFDESFPVNEETVNELEENSNCTFDGALASRRGKIDMICKVCKNEVDGERIKICGHPDCSKYYHVRCLTSKQLTSYGPRWYCPSCLCQVCLTDKDDNQIVLCDGCDDGYHIYCMKPPRTSIPKGNWFCRKCDAGLQVIRRAKKLYENESKRQRKTSEDGSKPGDRFEKKWNDKHGRDLDKVGGMDMLLTAANTLTLEEDLAAIRK 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0289 618 SUPERFAMILY FYVE/PHD zinc finger 499 552 IPR011011 -
Mibi05g0289 618 MobiDBLite consensus disorder prediction 561 591 - -
Mibi05g0289 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 546 IPR013083 -
Mibi05g0289 618 SUPERFAMILY FYVE/PHD zinc finger 449 499 IPR011011 -
Mibi05g0289 618 SUPERFAMILY FYVE/PHD zinc finger 340 391 IPR011011 -
Mibi05g0289 618 SMART PHD_3 344 390 IPR001965 -
Mibi05g0289 618 SMART PHD_3 451 499 IPR001965 -
Mibi05g0289 618 SMART PHD_3 502 545 IPR001965 -
Mibi05g0289 618 ProSiteProfiles Zinc finger PHD-type profile. 449 501 IPR019787 -
Mibi05g0289 618 ProSiteProfiles Zinc finger PHD-type profile. 497 547 IPR019787 -
Mibi05g0289 618 ProSiteProfiles Zinc finger RING-type profile. 452 498 IPR001841 -
Mibi05g0289 618 Gene3D - 234 392 - -
Mibi05g0289 618 ProSiteProfiles Zinc finger PHD-type profile. 342 392 IPR019787 -
Mibi05g0289 618 ProSitePatterns Zinc finger PHD-type signature. 495 544 IPR019786 -
Mibi05g0289 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 503 IPR013083 -
Mibi05g0289 618 PANTHER OS02G0192300 PROTEIN 252 398 - -
Mibi05g0289 618 Pfam PHD-finger 500 545 IPR019787 -
Mibi05g0289 618 Pfam PHD-finger 345 391 IPR019787 -
Mibi05g0289 618 FunFam PHD finger protein EHD3 isoform A 237 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0289 Mibi-ChrMibi05 2879282 2884270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0289 499 565 C2H2 Transcription Factor Family AT3G01460 41.791 3.68e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi05g0289 PHD 1e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0289 05 2879282 2884270 Mibi05g0289 05 2879282 2884270 ECH