Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0230 ATGGAGCAGAGCATCCTATGCAAATACACGGTCCATCACAGCGTTACCAAGAAGCTCGCAAAGCCCAACAACGGCTCCGATTTCACCAACCAGACCGAGCCCCGAATCGTACGGATATCCGTTACGGATCCAGATGCCACAGACTCCTCCAGCGACGACGAAGGACACTTCCTCTGCCGACCCAGAGTGAAGCGTTATGTGAACCAGATTGACATCCAAACCACCGCCAGAAACGGCCCCCACCGGAAAAGGCCCGCCGGAGCCACCTCCACTTGCCGGCGGCCCGCGAAGGCCTCCGCCGCCACCAACGGCAGGAAGTTCCGAGGCGTACGGCAACGACCTTGGGGGAAATGGGCGGCTGAGATTCGAGATCCGGCCAGACGTGTACGGCTCTGGTTGGGGACTTACGATACCGCCGAGGAAGCCGCCATGGTTTACGATAATGCCGCGATCAAGCTTCGTGGTCCCGATGCTCTCACCAATTTCGCGGTCCCACCGACGACGGCGGTAAAGGCCGAGGAGGAGGAAGAAGAAGAAGTGGAAATGACCGAAAAGCCAGAAATCAAAGTTTCAGTTCAGTCAGAAGCATCAGGCTCAGGCTACGATTCAGGAGAGGAGTCTCGTAATCTGTTGTCTCCGACGTCGGTGCTTCAATTTATAAGCAATTCGTGCGAGGAAACAGAGCCGGAAAAAGCGAAGGAAGAAATTTACCGAGCAGAACCGTTTGGGGAAGAAGAAGAGCCGTTGTGGAGGATAGAGATGCCGGTGTGGGATGACGTGTTGGCGAATTTTGAGACGCCGGTGTTGTGGGAAGAGCCGCCGCCGTCGATGTACTGTGAAACGACGGCGCCGGCGGCGGTGATGACGGAGGAGATAGGAGACTGGGAGAGAACGTACACGTCATCAGAGATGTGCCAGGTGGACGAATACTTTAGTGAAATATTGTTAGGTTCAGATCCTCTGGTGGCTCTCTGA 975 0.5579 MEQSILCKYTVHHSVTKKLAKPNNGSDFTNQTEPRIVRISVTDPDATDSSSDDEGHFLCRPRVKRYVNQIDIQTTARNGPHRKRPAGATSTCRRPAKASAATNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFAVPPTTAVKAEEEEEEEVEMTEKPEIKVSVQSEASGSGYDSGEESRNLLSPTSVLQFISNSCEETEPEKAKEEIYRAEPFGEEEEPLWRIEMPVWDDVLANFETPVLWEEPPPSMYCETTAPAAVMTEEIGDWERTYTSSEMCQVDEYFSEILLGSDPLVAL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0230 324 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677
Mibi05g0230 324 MobiDBLite consensus disorder prediction 19 37 - -
Mibi05g0230 324 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Mibi05g0230 324 CDD AP2 106 164 IPR001471 GO:0003700|GO:0006355
Mibi05g0230 324 MobiDBLite consensus disorder prediction 71 109 - -
Mibi05g0230 324 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Mibi05g0230 324 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Mibi05g0230 324 MobiDBLite consensus disorder prediction 19 56 - -
Mibi05g0230 324 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Mibi05g0230 324 MobiDBLite consensus disorder prediction 172 208 - -
Mibi05g0230 324 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Mibi05g0230 324 MobiDBLite consensus disorder prediction 190 208 - -
Mibi05g0230 324 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Mibi05g0230 324 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Mibi05g0230 324 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0230 Mibi-ChrMibi05 2363941 2364915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0230 7 226 AP2-EREBP Transcription Factor Family AT4G27950 46.725 2.82e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi05g0230 AP2 6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0230 05 2363941 2364915 Mibi05g0230 05 2363941 2364915 ECH