Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0209 ATGGATTTTGGTAGGATCGGACCCTCCGACCCGGGAAGTTCCTCCAGGCGATCCGATGCTCCCATAATTGATAAACCCTTACCCACCACCAATAAGAAGAAGCTCATCTTCCTCTTGGCACTTGTCGCCGTCCTTTTAATCGCCGGCTCGGCCGTCACGGCCGGCATTGTCATCGGTGGCCGGGCCAGCGGGTCGGCCCAAAACGGGCTGGGCTTACATGGGAAGCCCACGGAGGCAATTTCTCGGACCTGCAGAAAGACCCAGTACCCAAACCTGTGCGTGAACTCATTACTCGAATTCCCGGGGTCAACGACGGCGACGGAGGAAGAACTAGTCCACATTTCATTTAACATGACCCTGCAGCACCTGAGCAGAGCCCTCTACTCCTCCACAGGAATAATCTCAACCGTCCAGATGGATCCAATCGAACGGTCGGCGTATGAGGATTGCCTGGAGCTCATGGAGGATTCGGTGGACGCTCTTGCACGCTCCCTCACCTCAGTCGCCCCGTCACCGGGCGGCATAAGGGAGGTGGGGTCCAGCGACGATGTGATGACGTGGCTGAGCGCGGCCCTCACGAGTCAGGACACGTGTGGGGAGGGGCTGGCGGAGGCGAGGGGGTCGGTGAGGGATCAGATGGTGAATAATTTGAAGGACTTGTCGGAGCTTGTGAGCAACAGCCTGGCCATATTCTCGGCGAGCGGCGGAGGCGGCGGGGGAGGGGATTTCTCCGGCGTGCCGATACAGAACAGGAGGAGGAGATTGATGGGAGGGGATGATGGTGGGTGGGGGAATTTTCCGGCATGGTTGAGTGGGAGAGATCGGAGATTGCTGAGCCGGCCGGTGTCGGAGATTCAGGCCGATGTGATTGTGTCCAATGATGGGAGTGGCACCGTGAAGACCATCGCCGACGCCATCAAGAAGGCGCCCGAGCATAGTCGTCGCCGCTTTATCATTTACGTCAGGGCTGGAAGGTATGAAGAGAAAGATTTGAAGGTGGGAAGGAAGAAGACGAATGTGATGTTCATAGGGGACGGGATGGGAAAGACGATCATCAGGGGCAAAAGGAATGTTGCGGATGGCCTCACCACGTTCCACACAGCTTCCTTCGCTGCAACCGGTGCCGGTTTCATCGCACGTGACATAACATTCGAGAACTACGCCGGTCCGAGCAAGCACCAGGCGGTGGCCCTCCGTGTCGGAGCCGACCACGCGGTGGTTCACCGCTGCGAGATCCTGGGATATCAGGACACGTGTTACGTCCACTCCAACCGTCAATTCTTTAGGGAGTGTCGAATATATGGGACAGTTGACTTTATTTTTGGAAATGCGGCCGTCGTTTTCCAAAACTGCAGTCTCTTTGCCCGCAAGCCCATGGCCCAGCAAAAGAACACCATCACGGCCCAAAACCGAAAAGACCCGAATCAGAATACGGGTATATCCATCCATAATTGTCGGATCCTTCCTGCCCCGGACCTTGAACCTGAAAAGGGAAGCGTGTATACATATCTTGGCCGTCCGTGGAAATTATACTCTAGGACTGTGTACATGCTATCATACATGGACGATCACTTACATCCACGTGGATGGCTTGAGTGGGACGGCTCGTTTGCTTTAGACACATTGTACTACGGTGAGTACATGAATTATGGGCCGGGTGCGGGTATCGGAAAACGGGTTGGATGGCCCGGGTATCGGGTCATCAAATCACCGATGGAGGCGAGGCGGTTCACGGTGGCGGAATTCATATCTGGTTCGTCATGGCTGCCGTCAACGGGGGTGGCATTCTTAGCTGGTCTGTCTACTTAA 1809 0.5578 MDFGRIGPSDPGSSSRRSDAPIIDKPLPTTNKKKLIFLLALVAVLLIAGSAVTAGIVIGGRASGSAQNGLGLHGKPTEAISRTCRKTQYPNLCVNSLLEFPGSTTATEEELVHISFNMTLQHLSRALYSSTGIISTVQMDPIERSAYEDCLELMEDSVDALARSLTSVAPSPGGIREVGSSDDVMTWLSAALTSQDTCGEGLAEARGSVRDQMVNNLKDLSELVSNSLAIFSASGGGGGGGDFSGVPIQNRRRRLMGGDDGGWGNFPAWLSGRDRRLLSRPVSEIQADVIVSNDGSGTVKTIADAIKKAPEHSRRRFIIYVRAGRYEEKDLKVGRKKTNVMFIGDGMGKTIIRGKRNVADGLTTFHTASFAATGAGFIARDITFENYAGPSKHQAVALRVGADHAVVHRCEILGYQDTCYVHSNRQFFRECRIYGTVDFIFGNAAVVFQNCSLFARKPMAQQKNTITAQNRKDPNQNTGISIHNCRILPAPDLEPEKGSVYTYLGRPWKLYSRTVYMLSYMDDHLHPRGWLEWDGSFALDTLYYGEYMNYGPGAGIGKRVGWPGYRVIKSPMEARRFTVAEFISGSSWLPSTGVAFLAGLST 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0209 602 TIGRFAM PME_inhib: pectinesterase inhibitor domain 73 231 IPR006501 GO:0004857
Mibi05g0209 602 PANTHER PECTINESTERASE 45 590 - -
Mibi05g0209 602 CDD PMEI-like_3 84 233 - -
Mibi05g0209 602 Gene3D - 282 600 IPR012334 -
Mibi05g0209 602 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Mibi05g0209 602 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 233 IPR035513 -
Mibi05g0209 602 MobiDBLite consensus disorder prediction 1 25 - -
Mibi05g0209 602 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 232 IPR035513 -
Mibi05g0209 602 SMART PMEI_2 75 230 IPR006501 GO:0004857
Mibi05g0209 602 FunFam Pectinesterase 282 600 - -
Mibi05g0209 602 FunFam Pectinesterase 76 234 - -
Mibi05g0209 602 Pfam Pectinesterase 288 585 IPR000070 GO:0030599|GO:0042545
Mibi05g0209 602 Pfam Plant invertase/pectin methylesterase inhibitor 79 230 IPR006501 GO:0004857
Mibi05g0209 602 SUPERFAMILY Pectin lyase-like 285 599 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0209 Mibi-ChrMibi05 2055642 2058868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0209 1 601 Carbohydrate Esterase AT5G53370 63.079 0.0 771