Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0205 ATGATTTTGACTACTGGGTATTCCATATATCCATCACTTGTGGGAGGTTACGGTGTCTTGATGGACTTGGATAACATCGAGTGTGTGTCATCCACGGATGGTATTGATGAGGACGAGATCCACCATCATGGTATACATCATCACTCTGAGTTTTCATCCTCTAAGCCTCGCAATGGCGCCACTAATATGGGCCCCACGGTTATTGCTCCGGCAACCAGCGTCCACGAGTTGCTGGAATGCCCTGTCTGTACCAATTCTATGTACCCACCGATTCATCAGTGTCACAACGGGCACACCCTATGCTCAACATGTAAAATAAGGGTGCACAACCGATGCCCCACATGCAGACAAGAGCTTGGGGATATTAGATGTTTGGCTCTGGAGAAGGTAGCTGAATCACTTGAGTTACCTTGCAAATACTATTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAAACAATGTGCAATTTCAGACCATACAATTGTCCTTATGCTGGGTCAGAGTGTTCGGTTGTTGGGGATATCCCTTTCCTCGTTGCACATCTGAGGGACGATCATAAAGTGGACATGCACACTGGATGTACATTCAACCATCGTTATGTAAAGTCAAATCCCCGCGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGCTTTGGGCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGGATGGCTCCTGTTTACATGGCGTTCCTTCGTTTCATGGGAGACGAGAATGAGGCTCGAAATTATGGCTATAGCCTAGAAGTTGGGGCAAATAGCAGGAAAATGATTTGGGAGGGCACTCCAAGAAGTGTCCGGGATAGCCATCGTAAGGTCAGGGACAGCCACGACGGTCTGATCATCCAACGAAGTATGGCTCTTTTTTTCTCTGGTGGGGATAGGAAGGAGCTTAAGCTCAGAGTTACTGGAAGAATATGGAAAGAACAACAGAATCCGGATGCTGGGGTGTGCATACCAAATCTTTGTAGCTGA 1029 0.4636 MILTTGYSIYPSLVGGYGVLMDLDNIECVSSTDGIDEDEIHHHGIHHHSEFSSSKPRNGATNMGPTVIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKIRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETMCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYGYSLEVGANSRKMIWEGTPRSVRDSHRKVRDSHDGLIIQRSMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0205 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 186 IPR013083 -
Mibi05g0205 342 ProSiteProfiles Zinc finger SIAH-type profile. 133 193 IPR013010 GO:0008270
Mibi05g0205 342 FunFam E3 ubiquitin-protein ligase SINAT3 31 131 - -
Mibi05g0205 342 Pfam Seven in absentia protein family 122 321 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mibi05g0205 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 132 IPR013083 -
Mibi05g0205 342 SUPERFAMILY RING/U-box 71 122 - -
Mibi05g0205 342 CDD RING-HC_SIAHs 78 116 - -
Mibi05g0205 342 ProSiteProfiles Zinc finger RING-type profile. 80 116 IPR001841 -
Mibi05g0205 342 CDD Sina 194 322 - -
Mibi05g0205 342 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 59 327 - -
Mibi05g0205 342 SUPERFAMILY TRAF domain-like 133 325 - -
Mibi05g0205 342 FunFam E3 ubiquitin-protein ligase SINAT3 132 188 - -
Mibi05g0205 342 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 187 321 IPR008974 GO:0005515
Mibi05g0205 342 FunFam E3 ubiquitin-protein ligase SINAT5-like 189 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0205 Mibi-ChrMibi05 2035392 2038212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0205 52 328 C3H Transcription Factor Family AT2G41980 76.259 5.25e-163 456
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0205 05 2035392 2038212 Mibi05g0205 05 2035392 2038212 ECH