Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0189 ATGTCTCTCCGGAGAAGGACTCACGCATTGAAACCGGCATCCAAATCGTTGGAGTACGATGATGTAGGGTGCGAAGAATGTGGGTGCGGCCACTCGCCGGCCAAGTTGATCCTTTGCGACAAATGTGACCGAGGATACCACCTCTTCTGCCTCAGACCCATTCTTGTTTCTGTGCCTAATGGCTCTTGGTTCTGCCCCTCCTGCTCCAAAATCAACACGCCCAAGTCTTTTCCCCTGGTTCAGACCAAAATTGTTGATTTCTTTCGCATTCAACGATCAACGCAAGCTACTCGAGCGTCCTGTAGTCAAGATATCCGGAAGAAACGTAAGCGAGCCTCAAGCCTAGTGGTGTCCAAAAAGAAACGAAAGTTGCTGCCATTCTGCCCAAGTGAGGATCCTTCGAGGAGATTAGAACAGATGGCATCTCTGGCAACGGCTTTGACAGCAACTAATACAGAATACAGCAATGAGCTTACTTACATGCCCGGAATGGCACCCAGATCAGCTAATCACCCTTCTCTTGAAAAGGGGGGGATGCAGGTTTTGTCTAAAGAAGATACAGACACCTTGAACTTGTGCAAGAGTATGATGGAAAGAGGAGAATGTCCACCACTCATGGTTGTTTTTGATCCTCAAGAAGGGTTCACTGTTGAGGCAGATAAATGGATAAAAGACTTGACAATAATTACAGAATATGTTGGAGATGTTGACTACTTGAGGAAACGTGAAAATGATGATGGGGATAGCATGATGACACTTCTTTCCGCCTCTGATGCTTCACAAACGTTAGTGATCTGTCCGGACAAACGAAGTAACATCGCGCGGTTTATTAATGGCATCAACAATCACACACCGGAAGGAAAGAAGAAGCAGAACTTAAAATGCGTGAGGTTCAACGTCAATGGGGAGTGTCGGGTTCTACTGATTGCAAACAGAGACATATCGAAGGGGGAGAGATTGTACTATGACTACAATGGAAGCGAGCATGAATATCCAACGGAACACTTTGTGTAA 1014 0.4606 MSLRRRTHALKPASKSLEYDDVGCEECGCGHSPAKLILCDKCDRGYHLFCLRPILVSVPNGSWFCPSCSKINTPKSFPLVQTKIVDFFRIQRSTQATRASCSQDIRKKRKRASSLVVSKKKRKLLPFCPSEDPSRRLEQMASLATALTATNTEYSNELTYMPGMAPRSANHPSLEKGGMQVLSKEDTDTLNLCKSMMERGECPPLMVVFDPQEGFTVEADKWIKDLTIITEYVGDVDYLRKRENDDGDSMMTLLSASDASQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFNVNGECRVLLIANRDISKGERLYYDYNGSEHEYPTEHFV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0189 337 ProSitePatterns Zinc finger PHD-type signature. 24 68 IPR019786 -
Mibi05g0189 337 CDD PHD_RSF1 24 68 - -
Mibi05g0189 337 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 101 335 - -
Mibi05g0189 337 ProSiteProfiles Zinc finger PHD-type profile. 21 71 IPR019787 -
Mibi05g0189 337 FunFam Histone-lysine N-methyltransferase ATXR5 108 337 - -
Mibi05g0189 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 85 IPR013083 -
Mibi05g0189 337 ProSiteProfiles SET domain profile. 203 325 IPR001214 GO:0005515
Mibi05g0189 337 Pfam PHD-finger 24 69 IPR019787 -
Mibi05g0189 337 SMART PHD_3 26 69 IPR001965 -
Mibi05g0189 337 CDD SET_ATXR5_6-like 200 337 - -
Mibi05g0189 337 SUPERFAMILY FYVE/PHD zinc finger 16 75 IPR011011 -
Mibi05g0189 337 SUPERFAMILY SET domain 152 327 IPR046341 -
Mibi05g0189 337 Pfam SET domain 246 325 IPR001214 GO:0005515
Mibi05g0189 337 Gene3D SET domain 109 337 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0189 Mibi-ChrMibi05 1899792 1901614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0189 21 85 C2H2 Transcription Factor Family AT3G01460 31.343 3.01e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi05g0189 SET 4.2e-05 No_clan