Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0172 ATGATGACGGGTGGTGAGTATATTCAAGCATCAAAGGAACATAATATTGGAAGCTTCACCTGCTCAAATCCACCTGAGAATCTGAAAAAGAAGAACAACATAGAAAACAAGAGGAGGTTTAGTGATGAACAAATTCGATCACTTGAATGCATATTTGAATCAGAGTCAAAGCTTGAGCCAAGAAAGAAGATGCAACTAGCAAGAGATCTTGGGTTGCAGCCGCGCCAAGTAGCCATATGGTTCCAAAACAGAAGAGCCAGATGGAAATCAAAACATATAGAGCAAGAGTACAGGAAACTCAGAGATGAGTATGACAATTTAGCATCTCTGTTTGAGTCCATAAAGAAAGAGAAGGAATCCTTGCAAGCTGAGGTAAAAAAGCTTAGAGATTTAGTGGAGACGAGTGAAGATGGTAGTAAAAAGGAAAACAGGGCTGGGATGGAAACTAGCACAGAGGATGGTGCTTCAGGCAGTGGACAAAACAACTGGAGTGCTGAAGTAAAGCCAAATTTCTCAAATGAAGGTTCAGAGAATGCCAAGAATGATGATATAAGAGAATTGGGATCGATTGAAAAATGGTATAGTGTTGATCCAAGTGGTTTCTTGGATCAGTCTTGTAACAGTTCGCAGTGGTTAGATTTCTGGGATTGA 651 0.4025 MMTGGEYIQASKEHNIGSFTCSNPPENLKKKNNIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKHIEQEYRKLRDEYDNLASLFESIKKEKESLQAEVKKLRDLVETSEDGSKKENRAGMETSTEDGASGSGQNNWSAEVKPNFSNEGSENAKNDDIRELGSIEKWYSVDPSGFLDQSCNSSQWLDFWD 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0172 216 FunFam Homeobox-leucine zipper protein ATHB-7 17 91 - -
Mibi05g0172 216 Pfam Homeobox associated leucine zipper 91 132 IPR003106 GO:0006355|GO:0043565
Mibi05g0172 216 MobiDBLite consensus disorder prediction 132 148 - -
Mibi05g0172 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 165 IPR045224 GO:0003700
Mibi05g0172 216 Coils Coil 83 138 - -
Mibi05g0172 216 MobiDBLite consensus disorder prediction 200 216 - -
Mibi05g0172 216 CDD homeodomain 37 92 IPR001356 GO:0003677
Mibi05g0172 216 SUPERFAMILY Homeodomain-like 20 91 IPR009057 -
Mibi05g0172 216 MobiDBLite consensus disorder prediction 197 216 - -
Mibi05g0172 216 Pfam Homeodomain 37 89 IPR001356 GO:0003677
Mibi05g0172 216 MobiDBLite consensus disorder prediction 132 183 - -
Mibi05g0172 216 SMART HOX_1 34 95 IPR001356 GO:0003677
Mibi05g0172 216 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Mibi05g0172 216 Gene3D - 35 97 - -
Mibi05g0172 216 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Mibi05g0172 216 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Mibi05g0172 216 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Mibi05g0172 216 MobiDBLite consensus disorder prediction 149 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0172 Mibi-ChrMibi05 1764785 1765522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0172 1 215 Homeobox Transcription Factor Family AT2G46680 40.684 9.93e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi05g0172 Homeodomain 2e-17 CL0123