Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0163 ATGTCACAACAAAATCAAAACAAGATGGTCACTCCAAACAATGCCAAACAATTTGGTGACACAACCTACACCAAGATCTTCGTTGGAGGATTGGCTTGGGAGACCAAAAGAGACACTTTGAGACATTATTTTGAGCAGTTTGGAGAGATATTAGAGGCTGTTGTTATAAACGACAGAAACAGTGGAAGATCAAAAGGCTATGGCTTTGTGACATTCAAGAGCCCAGATTCTGCAATAAGAGCTTGTCAGAATCCATATCCTATGATTGATGGGAGGAGAGCTAATTGTAATCTTGCAGCTCTTGGTGCACAGAGATTCCATCCGCACACAACAGGAAAGGAGAAATTTAGTACTAGTTCTTGGCCTGTGGTTCCAGTTCCAATTCAAGGAATCTCCTCGTACTACAGTCAACACATACCCCAGTATGCGATTCCTTATCCACCATTAAGGTACCCTGGATATCCGCCCACACAAGAAATTTACGCAATGAACTATTATAATGTGTATGGAGGACAGCAAATTCCGGTTCGTTGGCCTTCAGTATATTATCAGCCGTATAATGGGGTTGGACAGATGGTTGCACCATCATATTTGAAAAAGGCACAATACACAAACCCTTCATCTCAGGAATTGTTCACAGCTTCTCCTTCAAGAACCACCACAGGAACAGAAGCAGCAGGAATGGTCGGAACCTCCCCTGAGCAAAAATCTTGA 714 0.4272 MSQQNQNKMVTPNNAKQFGDTTYTKIFVGGLAWETKRDTLRHYFEQFGEILEAVVINDRNSGRSKGYGFVTFKSPDSAIRACQNPYPMIDGRRANCNLAALGAQRFHPHTTGKEKFSTSSWPVVPVPIQGISSYYSQHIPQYAIPYPPLRYPGYPPTQEIYAMNYYNVYGGQQIPVRWPSVYYQPYNGVGQMVAPSYLKKAQYTNPSSQELFTASPSRTTTGTEAAGMVGTSPEQKS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0163 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Mibi05g0163 237 MobiDBLite consensus disorder prediction 208 237 - -
Mibi05g0163 237 CDD RRM_RBM24_RBM38_like 24 99 - -
Mibi05g0163 237 Gene3D - 1 114 IPR012677 -
Mibi05g0163 237 PANTHER BOULE-RELATED 9 221 IPR037366 -
Mibi05g0163 237 SUPERFAMILY RNA-binding domain, RBD 11 99 IPR035979 GO:0003676
Mibi05g0163 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
Mibi05g0163 237 SMART rrm1_1 25 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0163 Mibi-ChrMibi05 1703261 1704617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0163 20 100 C2H2 Transcription Factor Family AT2G19380 41.975 2.31e-15 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0163 05 1703261 1704617 Mibi05g0163 05 1703261 1704617 ECH