Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0162 ATGGCGGTAGCTGAGAATGCCGGAGTCATAATCGGCTCATCCAGTCAAAATTTAGATAACAGTGTGGTGTCATCGGACTCAAGTGTGACAAATGAGCTTGAGAAATCGAAACCCAGAACTGGGGCTATTGTAAATGGTGTAGAAACTGATGTTCAACCTGTGAACGGCGATCAGAGTCTGAATGATGTGTTCGGCCATCAGGATAGAGCTCCGTCGGTCCCTAACGGCAATTACAAGTCTCAAATCACTCAGATGCGTAATGGGTTCGAGGCAAATGGGGTTCATAACCAGCAGATGGTGCTAAATAACAGCGGATATGGAATTAAGCAAATGTCTAACGGTGAAGATGGTGGCGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGTTGCTGTCGAAGTTGAATCCCATGGCCGAGGAATTTGTACCACCATCACTTACCAATAATCACGGATTCTTTGGTGGTGCTGGGTTTAGCTACCCTAACAACTTTCTACCCCTCACTAATTATGTCAATGCAAATGGACATACTAACAGAAGGAGGAAGAATGGATACAATCAAGGGAAGCGAAGAGCTAATAATAAAATGGATGTGGAGAAGAGGGAAGAGATGACTAAGAAGACTGTGTATGTGTCTGACATTGATCATCAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGACAGGTTGTTGATTGCCGAGTATGCGGGGATCCTAATTCCGTACTTCGATTTGCCTTCATTGAATTTACGGATGAAGAAGGTGCGAGGGCTGCTTTGAACCTGTCTGGCACTATGCTAGGTTATTACCCAGTGAGAGTGCTGCCGTCAAAAACTGCTATAGCACCAGTTAACCCCACATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCAAGAACAATTTACTGCACAAATATCGACAAGAAGGTTACTCAGGCAGATGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCACTCAACTCGAATTGCATTTGTTGAGTTCACTATGGCTGAAAGTGCAATTGCAGCTCTGAACTGCAGTGGTGTGATTTTGGGTTCGCTGCCTATCAGGGTAAGTCCATCAAAAACACCTGTCCGATCTCGCGTGCCACGTGGATCAATGCAATGA 1182 0.4509 MAVAENAGVIIGSSSQNLDNSVVSSDSSVTNELEKSKPRTGAIVNGVETDVQPVNGDQSLNDVFGHQDRAPSVPNGNYKSQITQMRNGFEANGVHNQQMVLNNSGYGIKQMSNGEDGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNNHGFFGGAGFSYPNNFLPLTNYVNANGHTNRRRKNGYNQGKRRANNKMDVEKREEMTKKTVYVSDIDHQVTEEQLAALFLNCGQVVDCRVCGDPNSVLRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRVPRGSMQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0162 393 CDD RRM1_CID8_like 207 285 IPR034823 -
Mibi05g0162 393 Pfam Ataxin-2 C-terminal region 132 146 IPR009818 -
Mibi05g0162 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 283 IPR000504 GO:0003723
Mibi05g0162 393 Gene3D - 172 285 IPR012677 -
Mibi05g0162 393 Gene3D - 292 386 IPR012677 -
Mibi05g0162 393 MobiDBLite consensus disorder prediction 176 202 - -
Mibi05g0162 393 MobiDBLite consensus disorder prediction 17 45 - -
Mibi05g0162 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 381 IPR000504 GO:0003723
Mibi05g0162 393 MobiDBLite consensus disorder prediction 17 35 - -
Mibi05g0162 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 374 IPR000504 GO:0003723
Mibi05g0162 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 272 IPR000504 GO:0003723
Mibi05g0162 393 SUPERFAMILY RNA-binding domain, RBD 179 284 IPR035979 GO:0003676
Mibi05g0162 393 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 130 386 - -
Mibi05g0162 393 FunFam Polyadenylate-binding protein-interacting protein 10 299 377 - -
Mibi05g0162 393 SMART rrm1_1 306 377 IPR000504 GO:0003723
Mibi05g0162 393 SMART rrm1_1 209 279 IPR000504 GO:0003723
Mibi05g0162 393 FunFam Polyadenylate-binding protein-interacting protein 11 172 285 - -
Mibi05g0162 393 CDD RRM2_CID8_like 301 382 IPR034825 -
Mibi05g0162 393 SUPERFAMILY RNA-binding domain, RBD 296 387 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0162 Mibi-ChrMibi05 1695094 1699152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0162 210 369 Eukaryotic Initiation Factors Gene Family AT1G34140 26.220 1.53e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0162 05 1695094 1699152 Mibi05g0162 05 1695094 1699152 ECH