Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0142 ATGCTCGATTCAGAATTAGGGTTATTGCTTGCGCGCAGAGAGCAGAAGAAGGACCAGGAGGAAGAAACAGAGCCAGCGCCGAAGATGAAGACAATCCTCTCCAGCGAAACAATGGACATTCCTGAGGGGGTGTCCGTGAAAGTGAAAGCTAAGATCATTGAGGTAGAGGGACCTCGCGGGAAGCTTGTCCGTGATTTTAAGCATTTGAATCTCGATTTTCAACTCATCACCGACGAGGAAGGCAAGAGAAAGCTTAAGGTTGATGCCTGGTTTGGATCCAGGAAGACCTCTGCTGCCATTCGTACGGCCCTCAGTCATGTAGAGAATCTCATTACTGGTGTCACTAAGGGTTACCGCTATAAGATGAGGTTTGTGTATGCCCATTTTCCTATCAACGCCAGCATTACCAATAACAGCAAGTCCATTGAGATCCGAAACTTCCTTGGCGAGAAAAAGGTGAGGAAAGTGGATATGCTTGATGGAGTTTCAATTATAAGATCTGACAAAGTTAAGGATGAGTTGGTATTGGATGGAAATGATATTGAGCTAGTTTCTCGATCTGCCGCCCTCATCAATCAGAAATGCCATGTCAAGAATAAGGATATTCGGAAGTTTCTTGATGGTATTTACGTTAGCGAGAAGGGAACAATCCTTGTTGAAGAGTAG 666 0.4489 MLDSELGLLLARREQKKDQEEETEPAPKMKTILSSETMDIPEGVSVKVKAKIIEVEGPRGKLVRDFKHLNLDFQLITDEEGKRKLKVDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNNSKSIEIRNFLGEKKVRKVDMLDGVSIIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTILVEE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0142 221 ProSitePatterns Ribosomal protein L6 signature 2. 193 214 IPR002359 GO:0003735|GO:0005840|GO:0006412
Mibi05g0142 221 FunFam 60S ribosomal protein L9 118 221 - -
Mibi05g0142 221 SUPERFAMILY Ribosomal protein L6 29 117 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mibi05g0142 221 SUPERFAMILY Ribosomal protein L6 118 214 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mibi05g0142 221 Pfam Ribosomal protein L6 40 117 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mibi05g0142 221 Pfam Ribosomal protein L6 129 208 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mibi05g0142 221 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 29 217 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mibi05g0142 221 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 29 218 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mibi05g0142 221 Gene3D - 29 117 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Mibi05g0142 221 FunFam 60S ribosomal protein L9 29 117 - -
Mibi05g0142 221 Gene3D - 118 221 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0142 Mibi-ChrMibi05 1540951 1542425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0142 29 221 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 82.990 3.67e-118 332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi05g0142 05 1540951 1542425 Mibi05g0142 05 1540951 1542425 ECH