Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0106 ATGTATTTAGTGCATCTATGTATCGCGGCAACGTTCTCCAAGCTGGGATTTTCGCGAACTCGCGCGAGATTATTGCTCCAGCGACACGCTCCTTTCTTGAGTTTCTGCTGTGTTCAGTTAGTTTTGTATCTCCAGAGTTTTCAACCCAAGGCGTGGAATTTTCTACCTTTGTCTGAGCTTATCAATCAGGGAGAAGGAGGTGAATGCCAGTTGTTCTGCTGCTTGCCGACTATTGCGTTGTATCTCTCATCCCACCCTTTCTATGGTTCATATCAGTTAAATTCAGTCAAGTCCGTTGATTTTTCTTCATTTACCAGTTTAGATGTTCAAATTAAAGTTCTTGTGGTTCATGCCGATTCACGGACAAAAACACGGATAAGTTGGTTTTGTCTTCTGCCGGTAGTGACAAGTATGGGTAGACGAAAACAAAGCAGACCCCACCGAGCTGGTGGGGTCATGCTAGAAACACAGGCAACTGCTGGAGCAGAACTGGATAAACAGAAACTGCTGGAAACAGGGGGACAAGGAAAGGAGGATTTTGGTGAAGTTCATTATCCCTACTTTGTTGAAGTTGATAGGTCCAATTGGTTAGCAAACGAACACCTTGATATTTCTGAAGTTGTTCTAACTGATTTGAAGCTGGCAGAAGGCTTTTCTGGTTTTGAACTTTCCGACGACTTTTATCAGGATTCCCGATATTCTTTAAGACTTCAGATGTTTAATGCCGATCATATTCTTAGTCGAATTAAACTAGGCCATTGGCCTATAGTGGCTTATTCTGATATTCATCTAGAGTTTGTAAAAAGAGGATTGGATCATACAGAAGCATGTACAGTGCTGTTGTCTGGAGTTTTTGATGGTCCTGATGAAGGTGTCTCAGGTCTTACTCACTTGGCAAGTTTGAAATTTATTACATTGAGGCCAGTTCTTGGGATTAGGTTTTCTGAAGACATGCTTTCCCTCAGATTAAGGGTTGAGGTACTAAAGAGTGCCTTTCATGCATGTAAGTCACTTCTAGATAGTTCCAGACATTTATGGAAGAAGAGTATGATGAATGTCATGTCTTGGCTGCGTCCTGAAATTATGACTTCAGAGGTTAGATATGGGGTTGGTAGCGATATGAAAGTGGAAGTTAATCCACAGACAGAGATCAGAGATGATACTCACTACAGCAGGAAACATGTGAGGTTTGACCCTGCAAGTTTCTATGAAGCCATTAGGCCTTCAAAATCAGAACCAATGCTTCAACGAGACATACCAGACCTACTTCCTGAATTGAGACCATATCAAAAGCGTGCAGCTTTTTGGATGGTAGAAAGAGAGAGAAAAAGAGCTGGAGGTCAGGGGGAAAGAGAGAGAAGTCATTTTTGTTCTCCTTTATGTGTGCCTGTGGATTTTATTGATAATAATTCCAAAATGTTCTTCAATCCATTCAGTGGAAATGTTTCATTGTACCCAGAGACTCATGCACCATGTGTGGTTGGAGGCATTCTTGCAGATGAGATGGGTTTGGGAAAAACTGTTGAACTACTTGCTTGCATCTTCACTCATCAGAGATCAGCATCTGAAAATGACATTCTTATTGACCCAGAGTTGCAAGTTAATCAGGATCCTAAGGTTAATTTTAAAAGACTCAAGCAAGATCGTGTGGAGTGTACATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCTCCTGAAGGAAAGTCACTGAAATCAAAACAGGGATCTGAAAGCAAGAAGTTTAAAACTACCATAGCTGTAAGGGATGGGGAATATGTATGCCAAATATGCTCTGAACTAATTCAAGCTACCGAATCTCCTATTGCTTCTGGTGCCACTCTTATTGTTTGTCCAGCTCCTATTTTGCCACAGTGGCATGATGAAATTTTCCGCCATACACGTGCAGGTTCCTTGAAAACTTGTGTTTATGAAGGAGTGCGAGAAACATCTTTCACCAATACATCTATGGTGAATATCAGTGAACTTGCCTCTGCGGACATTGTATTAACAACATATGATGTACTTAAAGAGGATTTGTCTCATGATTATGATAGGCATGAAGGTGATAGGCACTTTTTGAGATTTCAAAAAAGGTACCCAGTTGTCCCAACTCTTCTCACCAGAATATACTGGTGGAGAGTTTGCCTGGATGAGGCTCAGATGGTGGAGAGTAATGCTGCAGCTGCCACTGAAATGGCACTGCGGCTTAATGCAAAGTATCGTTGGTGCATTACAGGAACCCCAATTCAACGAAAGCTTGATGACTTACATGGATTATTACGATTCCTCAAAGCTAGTCCTTTTGATATTTACCGTTGGTGGGCTGATGTTATTCGGGATCCTTATGAGAAGGGAGATGTTGGAGCTATGGAATTTACACATAAAATCTTCAAACAAATCATGTGGCGTTCATCGAAAGAGCATGTTGCAGATGAGTTGCAGCTTCCTTCTCAGGAGGAGTGCCTTACTTGGCTCACTCTCTCACCAGTAGAAGAGCACTTTTACCAAAGGCAACACGAAACCTGTGTTAACTATGCTCATGAAATTATTGAGAGTTTGAGAAATGACATTCTTAAAATAAGTGTCCCAGGTTCTGTTTCTTCAGATGATATTTCTGATTCTTTCATCACTCACACAGAGGCCGGGAAGCTATTGAATGCTCTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGCTCTGGGTTGCGCTCTCTACAACAGTCGCCCATGACCATGGAGGAAATACTGATGGTCCTCATAACCAAGACTAAGATTGAAGGTGAGGAAGCTCTCAGGAGGTCGGTTGTTGCGTTAAATGGACTTGCTGCTATAAGCATAATGCAGAAGGACTTTTCTCAAGCAGCATCACTGTACATTGAAGCACTGACTTTGGCTGAAGAGCATTCCGAAGACTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAACCTGGCTGAAATACTCCCACGAACTGCAAACATTTCCCTTAAGCTCCCCTGCAAAGGAAGGCAGTTATCTAAAACTTCACAACTTAAGTCAAAAAAGCATACCCTTGAAAAGGTTGATTATTGTTTTGCGAAGAAGAAGAAAGGGAATGACTCTGATGATATATATTCCAATGTGGCTTCTGGAGAAGCATCGAATATTACATCTACCTTTTCTGAAACTGATTTAAATAGGCATCAGGAATCTGATGATGCATCACCTATCAGTTCTTTACAGTTCTTGACAGCAGAATGTGAAGATCTGAAGCATAAATACTTAACTGTGTTCAGTTCAAAGCTATCTGCTGTCCAACAGGAGTTTCAAAAATTGTATTTTCAGGTTTGCAATGAATATAGTGAGAGTACAAATGATACTACAATTTGGTGGTTAGAGGCTCTTCATCATTCTGAACAGAACAAGGATTTTTCTAATGAATTGCTTAGGAAGATTGAAGAAGCAATTGCAGGAACTTCAAACAATTCAAAGCCACCAAGAGTTGCTGCTCGTTTCCGGAGCATACACTCTCTGAAGTATCAAATCCAGACAGGTTTGGATCAATTAGAATCTTCTAGGAGGGTGCTGCTTGATCGAATCTTAGAAATTGATCAGACTATGGAGAAACCAAAAGACGAGGACATTGAACGAGTGGGTAAATGTCGAAATTGCCAACCTGATTCTGATGGTCCGCCGTGCATTTTGTGTGAACTTGATGAATTATTTCAGGATTATGAAGCAAGGCTCTTTGTTCTGAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTGGATTTGCAGAAGAAAAATTCTGCCCTGAATCGTTTCCTTTCAAAGCTATCACAATCTAATCACAATCCAAAAACATCTGATATTGACTATGAAGAATCGAAAAAAAGAAATGTTGGAGAAAGAGTTGTGGTTTCAAGATCAGCATCTCAATTGGAAATAATTCTTGGTGTGTTAAAGAATTATTGCAAAGCTCGATTGGGAAAGGATAGTGTTTCAGCAGCCACCAAACATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCTTTAGCCCAAGCTCAATATCTGCGTGCCCATGATGAAATTAAGATGGCAGTTTCGCGGTTGCACCTGAAGGCAAATGAAAATGATAAGTCTCTTGATGCTTTAGGTGAAAATGAATTATGTGCAGCAAGTTCAAACTTTTCCCATGAAAAGTTTATGTCTTTGGCCTCCTTGTCACAAATAAAAGGAAAACTTCGCTACCTAAAGGGTTTGGTACAATTGAAACAACAGCCACTGGAACATCCAGGAAGTTCGTCATTTACTCAGGAGGTGACTGCCATGTCAAATTTTAAAGAAGAGAAATGCGTACCAGCATCTAAAGCTGGTGGGGATTCATGCCCAGTTTGCCAAGAAAAGCTAGGCAGCCAGAAAATGGTTTTCCAGTGTGGGCATGTTACATGTTGTGAATGTTTGTTTGCTATGACAGAGCAAAGGCTTCAAGATAGTAAGTTTCATAAATGGGTGATGTGCCCAACATGTCGACAACACACCGATTTTGGGAACATCGCATATGCTGTTGATAGACAGCATGAATCTTTCAAAACTTCTGTGCTGCAAAATGTTGATAGCAGTGAGAAATGTGAATCATCCATCAGTGTTAAAGGTTCCTATGGAACTAAGATCGAAGCAATCACAAAAAGAATCTTGTGGATCAAGTCTACAGACCCTCAAGCAAAAGTCCTTGTATTTTCTAGTTGGAATGATGTTCTTGATGTATTGGAGCATGCTTTTGCTGCCAATAATATCACCTGCATTCGTATGAAAGGAGGCAGAAAATCTCATGTCGCCATCAGTCAATTTAGAGGACAGCAGAATGACAAAAAAGGAACATCCCAGGAATCAACATCAAATTTCATTCAGGTTTTATTAATTTTGATTCAACATGGAGCTAATGGCCTCAATCTTCTGGAAGCACAGCATGTGGTCCTTGTGGAGCCATTACTCAATCCTGCTGCTGAAGCACAGGCAATCAGCCGTGTTCACCGAATTGGACAGAAAAATAAGACTCTCATTCATCGTTTCATTGTAAAAGACACAGTTGAAGAGAGCATATATAAGCTAAACAGAAGCAGGGCTAGCCATTCAGTCATCAGTGGTAACACAAAAAATCAAGACCATCCTATGTTGACCCTGAAAGATGTTGAAACCTTATTGGCAACAGCTCCTTTAAGGATAACAGAAAGTGATGAAAATCCCACTTCAAGTCTAAGGCACTTGCCCCCTTCAATGGCCGCTGCTATTGCTGCTGAGAGGAGATTGAATGAACAAATGACATGA 5418 0.4097 MYLVHLCIAATFSKLGFSRTRARLLLQRHAPFLSFCCVQLVLYLQSFQPKAWNFLPLSELINQGEGGECQLFCCLPTIALYLSSHPFYGSYQLNSVKSVDFSSFTSLDVQIKVLVVHADSRTKTRISWFCLLPVVTSMGRRKQSRPHRAGGVMLETQATAGAELDKQKLLETGGQGKEDFGEVHYPYFVEVDRSNWLANEHLDISEVVLTDLKLAEGFSGFELSDDFYQDSRYSLRLQMFNADHILSRIKLGHWPIVAYSDIHLEFVKRGLDHTEACTVLLSGVFDGPDEGVSGLTHLASLKFITLRPVLGIRFSEDMLSLRLRVEVLKSAFHACKSLLDSSRHLWKKSMMNVMSWLRPEIMTSEVRYGVGSDMKVEVNPQTEIRDDTHYSRKHVRFDPASFYEAIRPSKSEPMLQRDIPDLLPELRPYQKRAAFWMVERERKRAGGQGERERSHFCSPLCVPVDFIDNNSKMFFNPFSGNVSLYPETHAPCVVGGILADEMGLGKTVELLACIFTHQRSASENDILIDPELQVNQDPKVNFKRLKQDRVECTCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPEGKSLKSKQGSESKKFKTTIAVRDGEYVCQICSELIQATESPIASGATLIVCPAPILPQWHDEIFRHTRAGSLKTCVYEGVRETSFTNTSMVNISELASADIVLTTYDVLKEDLSHDYDRHEGDRHFLRFQKRYPVVPTLLTRIYWWRVCLDEAQMVESNAAAATEMALRLNAKYRWCITGTPIQRKLDDLHGLLRFLKASPFDIYRWWADVIRDPYEKGDVGAMEFTHKIFKQIMWRSSKEHVADELQLPSQEECLTWLTLSPVEEHFYQRQHETCVNYAHEIIESLRNDILKISVPGSVSSDDISDSFITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLITKTKIEGEEALRRSVVALNGLAAISIMQKDFSQAASLYIEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPRTANISLKLPCKGRQLSKTSQLKSKKHTLEKVDYCFAKKKKGNDSDDIYSNVASGEASNITSTFSETDLNRHQESDDASPISSLQFLTAECEDLKHKYLTVFSSKLSAVQQEFQKLYFQVCNEYSESTNDTTIWWLEALHHSEQNKDFSNELLRKIEEAIAGTSNNSKPPRVAARFRSIHSLKYQIQTGLDQLESSRRVLLDRILEIDQTMEKPKDEDIERVGKCRNCQPDSDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNSALNRFLSKLSQSNHNPKTSDIDYEESKKRNVGERVVVSRSASQLEIILGVLKNYCKARLGKDSVSAATKHLHIFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLKANENDKSLDALGENELCAASSNFSHEKFMSLASLSQIKGKLRYLKGLVQLKQQPLEHPGSSSFTQEVTAMSNFKEEKCVPASKAGGDSCPVCQEKLGSQKMVFQCGHVTCCECLFAMTEQRLQDSKFHKWVMCPTCRQHTDFGNIAYAVDRQHESFKTSVLQNVDSSEKCESSISVKGSYGTKIEAITKRILWIKSTDPQAKVLVFSSWNDVLDVLEHAFAANNITCIRMKGGRKSHVAISQFRGQQNDKKGTSQESTSNFIQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRASHSVISGNTKNQDHPMLTLKDVETLLATAPLRITESDENPTSSLRHLPPSMAAAIAAERRLNEQMT 1805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0106 1805 CDD PHD_TCF19_like 554 618 - -
Mibi05g0106 1805 CDD SF2_C_SNF 1584 1722 - -
Mibi05g0106 1805 Pfam SNF2-related domain 429 921 IPR000330 GO:0005524|GO:0140658
Mibi05g0106 1805 SUPERFAMILY FYVE/PHD zinc finger 548 620 IPR011011 -
Mibi05g0106 1805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 823 IPR027417 -
Mibi05g0106 1805 Gene3D - 482 548 IPR038718 -
Mibi05g0106 1805 SMART ultradead3 422 794 IPR014001 -
Mibi05g0106 1805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 1766 IPR027417 -
Mibi05g0106 1805 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1590 1762 IPR001650 -
Mibi05g0106 1805 SMART helicmild6 1618 1711 IPR001650 -
Mibi05g0106 1805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1484 1557 IPR013083 -
Mibi05g0106 1805 CDD DEXQc_SHPRH 426 825 - -
Mibi05g0106 1805 Pfam Helicase conserved C-terminal domain 1587 1711 IPR001650 -
Mibi05g0106 1805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 618 IPR013083 -
Mibi05g0106 1805 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 138 1804 - -
Mibi05g0106 1805 Gene3D - 1558 1792 IPR027417 -
Mibi05g0106 1805 SUPERFAMILY RING/U-box 1486 1545 - -
Mibi05g0106 1805 SMART PHD_3 551 619 IPR001965 -
Mibi05g0106 1805 ProSiteProfiles Zinc finger RING-type profile. 1493 1541 IPR001841 -
Mibi05g0106 1805 Gene3D - 619 846 IPR038718 -
Mibi05g0106 1805 ProSitePatterns Zinc finger PHD-type signature. 552 618 IPR019786 -
Mibi05g0106 1805 SMART ring_2 1493 1540 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0106 Mibi-ChrMibi05 1298569 1318016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0106 626 919 RAD5 or RAD16-like Gene Family AT5G22750 30.100 5.73e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi05g0106 SNF2_N 1.4e-86 CL0023