Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0105 ATGTATTCAGCCGCAGATCCGACCGTCCGATCTTTCCTAAATTGGTTGACACTATTAGTATTAACCTACCTTACCCTCGTTTCCCCTCTTTCTCTTCTTCCGCTTCACCATCTCTTTCCGCTGGCGGTCCCTCTTAAGGCTGCCTCAGGAGTCAGGAGGCTTTCGCTGGAGACTTCATTCATTCTGGTGAGAGAAACTACTCACTTCTTGGGGTCTTCGATGGAGAAGGAATTGGTCCAATTATATGAAGCCGTAAAGAAGGCGGCTGATGTGGCGACTTCAACCGATAGCGAGGTTGAAGAAAGCCGATGCCTTGATGCTTTTAAGCAGCTCAAGAAATTTCCCGTCAATTATCAAATTCTTGTGTCCACCCAGGTGGGCAAACATCTAAAGGTGCTAACAAAGCATCCGAGAAAGAAAATCCGGGCTTTTGCTGTTGACCTGATTGAGATATGGAAGGACATTATCATCAAGGAAACTAGCAAAAATAAGAATGGGAGCTCACAGAATAATGTTCAGTTGGCAAATGGGGAGAAAGCTAAAGTTGAGAAGGATCAGAAGACTCATTCGGTAAAGATTGAGAAGGTTTCAAAAGCAGACATTGTCAAGGTTGAGAAAACTGATAGGAATGGGACATCAAGCTCTGAATATGCAAAGAAGGAAGCGGTTTCGCCAGCAAATGTTAAGGTAGAAAAAGTTGCCAAGGATGAGAAGCCAACTTCTGGATTGAAGAAGGCATCCTCAAGCCCTGCAGCTCCACCTAAGCTGAAAACTATGATTAAATCTAATGATGTGATCCGAGACAAGATGAGGGAGATTTTCAGAGAGGCGTTCTCTAAGGTTTCTGGAGAGGCTGATGAAGCAATCACGGATCAGGTTAATGCTTGTGACCCTATTCGGGTTGCTGTTACAGTGGAATCTGTACTATTTGAGAAGTGGGGTCCTTCTAATGGGGCTCAAAAGGTCAAGTATAGGTCCTTGGTGTTTAATCTCAAGGATCCAAACAACCCAGATTTCCGGAGAAGAGTTCTGCTCGGAGAATTGGCACCAGAGCGACTCATCAACATGAGCACAGAAGACATGGCCAGCGATCAGAGGAAGAATGAGAATGAGAAACTCAAGCAGAAAGCTTTATTTGAGTGTGAGCGAGGACAACAGCCAAAAGCCACGACTGATCAATTTAAGTGCGGTCGATGTGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACATATGTCACTTGCGTTTCATGCAATAACCGTTGGAAATTCTGTTAG 1305 0.446 MYSAADPTVRSFLNWLTLLVLTYLTLVSPLSLLPLHHLFPLAVPLKAASGVRRLSLETSFILVRETTHFLGSSMEKELVQLYEAVKKAADVATSTDSEVEESRCLDAFKQLKKFPVNYQILVSTQVGKHLKVLTKHPRKKIRAFAVDLIEIWKDIIIKETSKNKNGSSQNNVQLANGEKAKVEKDQKTHSVKIEKVSKADIVKVEKTDRNGTSSSEYAKKEAVSPANVKVEKVAKDEKPTSGLKKASSSPAAPPKLKTMIKSNDVIRDKMREIFREAFSKVSGEADEAITDQVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLVFNLKDPNNPDFRRRVLLGELAPERLINMSTEDMASDQRKNENEKLKQKALFECERGQQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVSCNNRWKFC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0105 434 MobiDBLite consensus disorder prediction 162 189 - -
Mibi05g0105 434 CDD TFIIS_I 82 156 - -
Mibi05g0105 434 Gene3D - 243 362 IPR036575 GO:0006351
Mibi05g0105 434 Pfam Transcription factor S-II (TFIIS), central domain 263 380 IPR003618 GO:0006351
Mibi05g0105 434 ProSiteProfiles TFIIS N-terminal domain profile. 83 159 IPR017923 -
Mibi05g0105 434 SMART TFS2_5 81 158 IPR003617 GO:0005634
Mibi05g0105 434 Pfam Transcription factor S-II (TFIIS) 394 432 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mibi05g0105 434 SMART Cys4_2 394 433 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mibi05g0105 434 ProSiteProfiles TFIIS central domain profile. 266 389 IPR003618 GO:0006351
Mibi05g0105 434 TIGRFAM TFSII: transcription elongation factor S-II 87 434 IPR006289 GO:0003676|GO:0005634|GO:0006368
Mibi05g0105 434 SUPERFAMILY Elongation factor TFIIS domain 2 252 364 IPR036575 GO:0006351
Mibi05g0105 434 SUPERFAMILY Zinc beta-ribbon 373 432 - -
Mibi05g0105 434 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 87 434 - -
Mibi05g0105 434 Gene3D - 363 434 - -
Mibi05g0105 434 ProSitePatterns Zinc finger TFIIS-type signature. 396 431 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mibi05g0105 434 Pfam TFIIS helical bundle-like domain 109 156 IPR017923 -
Mibi05g0105 434 SMART mid_6 268 372 IPR003618 GO:0006351
Mibi05g0105 434 ProSiteProfiles Zinc finger TFIIS-type profile. 392 432 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mibi05g0105 434 FunFam Probable Transcription elongation factor S-II 363 434 - -
Mibi05g0105 434 MobiDBLite consensus disorder prediction 232 254 - -
Mibi05g0105 434 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 69 172 IPR035441 -
Mibi05g0105 434 MobiDBLite consensus disorder prediction 162 176 - -
Mibi05g0105 434 PIRSF TFIIS 73 434 IPR035100 -
Mibi05g0105 434 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 73 171 IPR035441 -
Mibi05g0105 434 CDD Zn-ribbon_TFIIS 387 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0105 Mibi-ChrMibi05 1293565 1296086 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mibi05g0105 TFIIS_M 4.6e-32 No_clan