Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0057 ATGGATGAATCCTCCCTGCCAGCTACGATGATCTTCTCAGGCTTTCTACCAACTGGATCATTGCTAGAGTCGTTGGTTCATATATCTAATGAAGTTTCCTCCATGGAAAAGTTTCCTTTTGTTCAACTCAGGAATGTCTCATCCATGATCAGGAGGGTGAAGCTTCTTTCTTCTCTTTTCGAGGAGATTCAGGAAACAGATTCCCCACTTCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTCTGTGATCAGAAGAGTGAAGCATTTGATCCAAGACTGCCAAGAAAGCAGCTCACTTTGGAGTCTCATACAGTTAGAGTTTATTTCCAATCAGTTCTATGTGCTTGTGAAGGAGATGGGAAGGGCTCTAGATATCCTTCCTCTGAGCTTGCTTAATATCACAGCAGATATACGAGAGCAAGTGGAACTTCTGCACAAGCAAGCAAAAGCGGTTGAGTTGTTCATTGATCCTCGCGAGCTGCGACGAAGAGAGCAGCTTCTGCATGTAATGGCTCATAACATTCTACAGAACAAGAAGAGCAAGGGATTTCCCGAGTTTGGTAAAGTGCAACAAATATTGAGCAGCATTGGTTTGAGAACCCCGTCAGACTATGATAGAGAAGTTTCAAAGCTAGAGACTGAAGCTCAGAATCAGGCCGGTACAGGAGGGTTAATCGTTATGTCTAATATACATAATCTCATATCTCTGGTTACTTATTCCAAATCCATGATATTCAGAAACGGTGGAAACGAGATAGATGAAGACTGTAAGCCTGCAGCGTCCACATTCACATACAAGAGCTCTGATAATTCTTTCTCTTCACCTTCACCTTCAGCACCTAATGTTCCTGACGAATTTCGGTGCCCAATTTCACTTGATTTAATGAGAGATCCAGTGATTGTATCATCTGGGCATAGTTATGATCGAATCTCAATTGCACAGTGGATAAACTCGGGACATCATACTTGCCCAAAAAGTGGGCAAAGATTGATCCACACTGCTCTAATACCCAACTATGCATTGAAGAGTCTTGTGCAGCAATGGTGCTATGAGAATAACCTCCCAGTGAATGAGCCCACATCATCTTCCTCCTCAACCTCGGAGGATCCAAACAGCAAGGACAACTCAAATGAGAATACCGGCGACCATATCTCTGCTAAAAAAGCAGCCATAGATGCTGTTAAAATGACGGCAGAGTTTCTAGTGGGAAAATTGGCAACTGGGTCAGCTGAAATCCAAAGGCAGGCTGCTTATGAGCTTAGATTGCTTGCAAAAACTGGGATGGATAATCGAAGAATCATCGCGGAGGCAGGGGCAATTCCATTTCTAGTGACATTACTAGGATCCCATGATCCAAGAATCCAGGAGCACGCCGTCACGGCCTTGTTTAATCTCTCCATATTCGACAATAACAAGGTTTTGATAGTAGCTGCCGGAGCAGTGGATCACATAGTAGAAGTGCTTGAATCGGGAAAAGCCATGGAGGCAAGAGAAAATGCAGCAGCAGCAATCTTTAGTTTGAGTATAGTTGATGACTGCAAAGTAGAAATCGGAGCACGTCCAAGGGCCATACCCGCATTAGTAGGAATGTTAAGAGAGGGAACTCCTATTGGGAAAAGGGATGCTGCTACTGCCATTTTCAATCTTGCAGTTTACAATCCAAACAAGGCCAAAATCGTTAATGCTGGGGCTGTTCCTTTGCTTGTCGAGTTGCTTATGGATGATAAGGCTGGGATCACGGATGATTCTTTGGCTGTGCTTGCTGTGCTGCTGGGTTGCTCTGAAGGTTTGGAGAAGATAAGGAACAGTAAAGAGTTGGTGTCTCTTTTGATTGATCTTTTGAGGTTTGGGTCACCCAAAGGGAAGGAGAATTCTATAACACTTTTGTTGGGGTTGTGCAAGGAAGAAGGTGAGGTGGTGGCAAGGAGGCTGTTGGCAAATCCTCGAAGCATTCCTTCTCTTCAAAGCTTGGCTGCTGACGGTTCTTTAAGAGCACGAAGGAAGGCCGATGCTTTGCTTAGACTGCTCAATAGGTGCTGCTCTCAACCTCATCATTCCCTTTGA 2070 0.444 MDESSLPATMIFSGFLPTGSLLESLVHISNEVSSMEKFPFVQLRNVSSMIRRVKLLSSLFEEIQETDSPLPPSSILCFTELFSVIRRVKHLIQDCQESSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLNITADIREQVELLHKQAKAVELFIDPRELRRREQLLHVMAHNILQNKKSKGFPEFGKVQQILSSIGLRTPSDYDREVSKLETEAQNQAGTGGLIVMSNIHNLISLVTYSKSMIFRNGGNEIDEDCKPAASTFTYKSSDNSFSSPSPSAPNVPDEFRCPISLDLMRDPVIVSSGHSYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYENNLPVNEPTSSSSSTSEDPNSKDNSNENTGDHISAKKAAIDAVKMTAEFLVGKLATGSAEIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLGSHDPRIQEHAVTALFNLSIFDNNKVLIVAAGAVDHIVEVLESGKAMEARENAAAAIFSLSIVDDCKVEIGARPRAIPALVGMLREGTPIGKRDAATAIFNLAVYNPNKAKIVNAGAVPLLVELLMDDKAGITDDSLAVLAVLLGCSEGLEKIRNSKELVSLLIDLLRFGSPKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSL 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0057 689 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Mibi05g0057 689 Gene3D - 375 688 IPR011989 -
Mibi05g0057 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 358 IPR013083 -
Mibi05g0057 689 PANTHER U BOX DOMAIN-CONTAINING 44 683 - -
Mibi05g0057 689 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Mibi05g0057 689 CDD RING-Ubox_PUB 288 330 IPR045210 -
Mibi05g0057 689 FunFam RING-type E3 ubiquitin transferase 495 682 - -
Mibi05g0057 689 Pfam U-box domain 284 354 IPR003613 GO:0004842|GO:0016567
Mibi05g0057 689 Pfam Armadillo/beta-catenin-like repeat 555 590 IPR000225 GO:0005515
Mibi05g0057 689 Pfam Armadillo/beta-catenin-like repeat 431 468 IPR000225 GO:0005515
Mibi05g0057 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 440 482 IPR000225 GO:0005515
Mibi05g0057 689 SUPERFAMILY ARM repeat 400 678 IPR016024 -
Mibi05g0057 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
Mibi05g0057 689 SUPERFAMILY RING/U-box 275 358 - -
Mibi05g0057 689 MobiDBLite consensus disorder prediction 359 384 - -
Mibi05g0057 689 Gene3D - 41 133 IPR036537 GO:0007166
Mibi05g0057 689 SMART arm_5 384 427 IPR000225 GO:0005515
Mibi05g0057 689 SMART arm_5 429 469 IPR000225 GO:0005515
Mibi05g0057 689 SMART arm_5 595 636 IPR000225 GO:0005515
Mibi05g0057 689 SMART arm_5 470 511 IPR000225 GO:0005515
Mibi05g0057 689 SMART arm_5 554 594 IPR000225 GO:0005515
Mibi05g0057 689 SMART arm_5 513 553 IPR000225 GO:0005515
Mibi05g0057 689 FunFam RING-type E3 ubiquitin transferase 283 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0057 Mibi-ChrMibi05 962731 964800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0057 19 684 U-box Gene Family AT3G46510 36.921 2.02e-127 390