Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g0047 ATGCTTTGTTTGCATCTTCATCATTCGGACAGTGGAAAGCTGACTCGTCACTCGTCACTCTCGAGGCCTTCTCGATTTTCCTCTCTCAGAGCCATTCACCCTACTCACTCCTACACTACTCCACACTTTTCAATTCTTTTCTTCCCAAAGAATCTGGGCATGTGCAGTGGTTCAAAGAATAAGCTTTCTCCCTCGGACAGCGCCATGGATAGCGAGTCTGAAAAGCGGAACTTCTGCGACCCTTCGGTTTTGCTTGAACTCTCAGCATCCGATGATCTTGAAGCCTTCAGAAAAGAAGTGGATGAGAAGGGCTACGACATAGACGTGGCCAGCTTTTGGTATGGCAGAAGGATTGGATCGAAGAAGATAGGGTGGGAGAAGAGGACGCCCCTCATGATTGCGTCCTTATTTGGAAGTACCAAAGTGTTGAAGTATATAATTGAGACTGGTAGGGTCGATGTGAACAAGACATGTGGTTCTGATAGGGCCACGGCTCTTCATTGTGCAGTTTCTGGTGGCTCTCATTTTTCAGTCGAAACTGTTCAGCTCTTGCTTGAAGCTGGTGCAGCTGCTGATTTCATTGATGCTCGTGGAAACAACCTGATTGCCCCTGCCTCTGATTCCTTCTCCAACGCAAGAAGAAAGGCCATAGAATTGTTGCTCAGAGGTGGGCAAGGAGATCAAATCATGAAGCAGGAGATGGAGCAACATAAAATTGCAGTGCCAACTTTGTCCTCAAAAGAAGGAGCTGAGAAAAAAGAATATCCTGTTGATGTATCATTGCCTGACATAAACAGTGGTATATACGGAACAGACGAGTTCAGAATGTACAGTTTCAAGGTGAAGCCGTGCTCAAGGGCTTACTCACATGATTGGACAGAGTGTCCGTTTGTTCATCCAGGGGAGAATGCAAGGAGGAGGGACCCACGTAAGTACCCGTACAGCTGCGTTCCCTGCCCTGAGTTTCGCAAGGGCACATGCCAGAAGGGAGATGCCTGTGAGTATGCACACGGTGTTTTTGAGTCCTGGCTCCATCCTGCTCAATACAGAACAAAGCTTTGCAAGGATGAGATTGGATGCACCAGGAAAGTTTGTTTCTTTGCTCACAAACCCGAAGACTTGCGCCCTGTGTATGCTTCTACTGGCTCTGCCGTGCCTTCTCCAAAGTCATTGGCCGGTGTACTTGATATGACTTCAATGAGTCCATTGGCTCTTAGTTCCTCACCTTTGCCCATGTCAACTGTTTCAACCCCGCCCATGTCTCCCATCACAGCTTCATCACCTCCTAAGAGTGGAGGCTTTTGGCAGAACCAGAGAAACCTCACCCCACCTTCATTGCAGCTCCCTGGGAGCCGGCTGAAGGCGTCCTTGAGTGCCAGGGATCTTGATCTTGATATGGAACTGCTTGGACTGGAAAGTCGTCCCGTAAACCAGCATCGGCAGCAATTGATCCAAGAATTGGCTCGAATCTCTTCAGTGTCCTTACGAAACAGAGACTCGAGTAGGATTGGTGATTTGAACCCAACAAACCTTGATGACCTTCTAGGATCTCAATTCCATGGCCTTTCATCACAGCTCTCATCTTCTAGTCAATTGAACTCTCTAAGTGGGCTTCAAATGCGCCAAAACATGAACCCCCTTCGTGCAAGCTATCCAACCAACATGTCTCCTTCTCAAGTGAGGAAATCCTCTGCATTTGGGTTTGACTCATCAGCTGCTGTGGCTGCAGCAGTGATGAATTCCAGGTCTGCCGCCTTTGCCAAGAGAAGCCAAAGTTTTATCGACCGCGGTGAATCAGTGAGCCACCATCTCGGGCTTTCTTCACCTTCCCACCCTTCCTGTAGGGTGTCCTCTGCTGTTTCAGATTGGAGCTCTCCTGATGGAAAATTGGATTGGGGCATTAATGGACATGCGATGCACATGCTGAAGAAATCTGCTTCATTTGGGTTTAGGAATAATGGGGTGTCTGCCACCTCCATGTCTCCATCAGAACAAGGTGAACCAGATGTCTCTTGGGTTCATTCCTTGGTTAAAGATGTGCCCTCCGAAGAGTTGTGTTGCTGA 2064 0.483 MLCLHLHHSDSGKLTRHSSLSRPSRFSSLRAIHPTHSYTTPHFSILFFPKNLGMCSGSKNKLSPSDSAMDSESEKRNFCDPSVLLELSASDDLEAFRKEVDEKGYDIDVASFWYGRRIGSKKIGWEKRTPLMIASLFGSTKVLKYIIETGRVDVNKTCGSDRATALHCAVSGGSHFSVETVQLLLEAGAAADFIDARGNNLIAPASDSFSNARRKAIELLLRGGQGDQIMKQEMEQHKIAVPTLSSKEGAEKKEYPVDVSLPDINSGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDACEYAHGVFESWLHPAQYRTKLCKDEIGCTRKVCFFAHKPEDLRPVYASTGSAVPSPKSLAGVLDMTSMSPLALSSSPLPMSTVSTPPMSPITASSPPKSGGFWQNQRNLTPPSLQLPGSRLKASLSARDLDLDMELLGLESRPVNQHRQQLIQELARISSVSLRNRDSSRIGDLNPTNLDDLLGSQFHGLSSQLSSSSQLNSLSGLQMRQNMNPLRASYPTNMSPSQVRKSSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGESVSHHLGLSSPSHPSCRVSSAVSDWSSPDGKLDWGINGHAMHMLKKSASFGFRNNGVSATSMSPSEQGEPDVSWVHSLVKDVPSEELCC 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g0047 687 MobiDBLite consensus disorder prediction 407 451 - -
Mibi05g0047 687 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 318 338 IPR000571 GO:0046872
Mibi05g0047 687 FunFam Zinc finger CCCH domain-containing protein 66 271 339 - -
Mibi05g0047 687 SMART ANK_2a 126 156 IPR002110 GO:0005515
Mibi05g0047 687 SMART ANK_2a 161 193 IPR002110 GO:0005515
Mibi05g0047 687 SMART c3hfinal6 348 371 IPR000571 GO:0046872
Mibi05g0047 687 SMART c3hfinal6 313 339 IPR000571 GO:0046872
Mibi05g0047 687 ProSiteProfiles Zinc finger C3H1-type profile. 313 340 IPR000571 GO:0046872
Mibi05g0047 687 PANTHER UNKEMPT FAMILY MEMBER 86 680 IPR045234 -
Mibi05g0047 687 SUPERFAMILY Ankyrin repeat 77 205 IPR036770 -
Mibi05g0047 687 Gene3D - 63 256 IPR036770 -
Mibi05g0047 687 Pfam Ankyrin repeats (3 copies) 119 189 IPR002110 GO:0005515
Mibi05g0047 687 ProSiteProfiles Ankyrin repeat profile. 161 196 IPR002110 GO:0005515
Mibi05g0047 687 Gene3D - 314 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g0047 Mibi-ChrMibi05 842621 845811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g0047 82 679 C2H2 Transcription Factor Family AT5G12850 39.574 1.79e-131 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi05g0047 Ank_4 1.9e-07 CL0465