Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g2127 ATGGGTTGTTTTACGGTCCTTAAGAGTAAGAAGAAGAAGTCTCAACAGATCAAGAATGTGAAACGGGTTAGCCATAAAGAAAGTTTACCTGCTGCAGTGCTACCTGAACCTCAAACTCATACACGCACGCTGCAGTCTGCACCTCCTAGTTTTAGGACCAGAGTGAAGCCCATTCAACCCATTAATAACATCACCTACAGTAGAATGCGGGCTTTATCTGCTCCATCGACTCTGGATGATGCTGAACAAGATGCCTTGACATCTATTGAGTATGAGGAACAAGATGACTCAAAATACCGGGCAGGATCAATAAAGGAGCAGCGTTCATCCAGTCCACAACCTTTACCTCTCCCATGTCCTCAGTTTGGTGGTTTATTAAAGGCAACATGTAGCTTTAAGCCAGGCACAGCTAGTAGTCCTCTCTATGCTTCAGGTCCTTTGCCACTGCCACCTGCCGGATCACTTCGAAACTTTACATACGAAGAAATTTCTGCTGCTTGCCACAATTTCTCTTCAGATCGGTGCACGTCAGAAGGTCTTTCTTCCACCATATTTAAAGCTTCTTTCGGTGATGAGGCTTCAAGTTCAAAGAAGCTTGAAGCCACTGTCACTCGCCTTCATCCATCTGCCCAGGGCTTAAAGGAATTCATAAATGAGGTTAATATTATTGCATCTTTGCAACATCCAAACCTTTGTAAATTGCTTGGTTTTCATGCAACTGAGGGTTCAGAACAGAGAATGTTGGTTTATGAGAGGCTATATCATGGAAGCTTGGACCGCCTATTGTTTGGGAGATCTGATGGCCCACCTATTGATTGGAATACAAGAATGAAAATTGCTATATGTGCTGCACAGGGTCTTACTTTCTTGCATGAAGAAGGGCCTTTCCAGGCAATGTATAATGAATTTTCAACTGCCAATATACAGATTGACAAAGATTTTAGTGCAAAGCTTTCAGGTTATGGTTGTGTCGGACATATTCCTGAGGAAGAGGTTTCAAGCAATTCAACGGCTGTTGGAAACCTATCTGCAGAGACCCTGGAAACAGGAATGCTCACTCCAAAGAGCAACGTTTGGAGCTTTGGGATTGTTCTTCTGGAGTTACTTACTGGAAGAAAAAATCTTGACAGCCGTCACCCAAAAGAAGAGAGGAATCTAGTGAAGTGGAGTCGGCCTTTCCTTGCTGATGATTGTCGACTGTCATTGATCATGGATCCTCAACTTAAAGGACGGTTTCCTTCCAAAGCAGTAAGAACAGTATCTGACATTGCATTGAAGTGCCTTCAAAATGAACCATCAGAAAGACCCACCATGAGAACGGTGGTTGAGCATCTGAGAAAAATACAGGATATGAAGTACTCTTGTCGGTTTCCACTGCAAGAGCCTGCAGCAATCTCCAGAAAATTGATGTCAAGGTCACCAAGTCTTAATGGTACCGTCAGTCCTGCACCTAGGTTGAGTTTCTCGCCATCTCCGCCTTCGGCAGCTGCCGGGACATCTATTTCACCTCCAAGATGGTCTGGTGTGCCCCTCTTGCTTCCTCCCCGTGCTTGTTCCTCCACCCTTTCAATGGAGGAGCTTGATCGCCAAGAATCCCGCAAGTCATCATCCTGTGTCTCCAGGAGGGCCATCGGGGCACCATTTTCATTTCGGCTTCTAAAACTGAGAGAGGAGGAGGCTCAGGTGGTTCCGACTTCCGACATCGATTCACATTCAGTCATGGCGGAAAGTGCTTCCTTTATGCTCTCTTCATTTTCTTCCTTCTTCACTGCCTCCTCCTCCTCCTCTTTTCCATCCCCCAAGCTCTCCTTCCTTCCATTGCGCCATTTTCATCGCACGCCCCCTTCTCCTCGATTTCTTAGGATTTATGCCTTATCCAGCAACGACATCAAAGTGGGTACTAACGTTGAAGTTGATGGTGCTCCTTGGCGCGTGTTGGAGTTTCTTCACGTCAAACCTGGTAAAGGAGCAGCTTTTGTGAGGACCAAAATGCGAAATTATATTACGGGGAACACTGTGGAGAAAACATTTCGAGCTGGGAGTTCGCTTGAGGAAGCAGATGTATTCAAGGAAACAAAACAGTTCACATATAAAGATGGTGCTCAATTTGTCTTCATGGACTTGAATACATTTGAGGAGATTCGTCTCTTAGAATCAGAAGTTGGAGACAGAAAGAAATGGCTGAAAGAGGGAATGGACTGCAATTTACTGTTATGGAATGGAAAAGTTATTGATCTTGAACTTCCCATCACAGTCAAACTCTCTGTAGTTGATGTGGATCCAGGACTTAAGGGTGACACTGCCCAAGGTGGATCAAAGCCTGCAACTCTGGACACCGGAGCTGTTGTGAACGTCCCACTCTTCGTAAATACGGGCGACGAAATATTGGTGGATACAAGAACTGGGCAGTACATGAGCCGTGCTTAA 2427 0.4528 MGCFTVLKSKKKKSQQIKNVKRVSHKESLPAAVLPEPQTHTRTLQSAPPSFRTRVKPIQPINNITYSRMRALSAPSTLDDAEQDALTSIEYEEQDDSKYRAGSIKEQRSSSPQPLPLPCPQFGGLLKATCSFKPGTASSPLYASGPLPLPPAGSLRNFTYEEISAACHNFSSDRCTSEGLSSTIFKASFGDEASSSKKLEATVTRLHPSAQGLKEFINEVNIIASLQHPNLCKLLGFHATEGSEQRMLVYERLYHGSLDRLLFGRSDGPPIDWNTRMKIAICAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEVSSNSTAVGNLSAETLETGMLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPSKAVRTVSDIALKCLQNEPSERPTMRTVVEHLRKIQDMKYSCRFPLQEPAAISRKLMSRSPSLNGTVSPAPRLSFSPSPPSAAAGTSISPPRWSGVPLLLPPRACSSTLSMEELDRQESRKSSSCVSRRAIGAPFSFRLLKLREEEAQVVPTSDIDSHSVMAESASFMLSSFSSFFTASSSSSFPSPKLSFLPLRHFHRTPPSPRFLRIYALSSNDIKVGTNVEVDGAPWRVLEFLHVKPGKGAAFVRTKMRNYITGNTVEKTFRAGSSLEEADVFKETKQFTYKDGAQFVFMDLNTFEEIRLLESEVGDRKKWLKEGMDCNLLLWNGKVIDLELPITVKLSVVDVDPGLKGDTAQGGSKPATLDTGAVVNVPLFVNTGDEILVDTRTGQYMSRA 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g2127 808 MobiDBLite consensus disorder prediction 38 53 - -
Mibi04g2127 808 MobiDBLite consensus disorder prediction 91 116 - -
Mibi04g2127 808 MobiDBLite consensus disorder prediction 15 53 - -
Mibi04g2127 808 Gene3D - 687 749 IPR012340 -
Mibi04g2127 808 Gene3D Phosphorylase Kinase; domain 1 151 251 - -
Mibi04g2127 808 SMART Elong_fact_P_C_2 752 807 IPR015365 GO:0005737|GO:0043043
Mibi04g2127 808 Pfam Elongation factor P, C-terminal 752 807 IPR015365 GO:0005737|GO:0043043
Mibi04g2127 808 SUPERFAMILY Nucleic acid-binding proteins 751 808 IPR012340 -
Mibi04g2127 808 Pfam Elongation factor P (EF-P) KOW-like domain 627 682 IPR013185 -
Mibi04g2127 808 Pfam Protein tyrosine and serine/threonine kinase 178 445 IPR001245 GO:0004672|GO:0006468
Mibi04g2127 808 FunFam Elongation factor P 687 750 - -
Mibi04g2127 808 CDD S1_EF-P_repeat_1 694 749 IPR001059 GO:0003746|GO:0006414
Mibi04g2127 808 CDD S1_EF-P_repeat_2 752 807 IPR015365 GO:0005737|GO:0043043
Mibi04g2127 808 ProSitePatterns Elongation factor P signature. 773 792 IPR013852 -
Mibi04g2127 808 MobiDBLite consensus disorder prediction 473 502 - -
Mibi04g2127 808 SUPERFAMILY Translation proteins SH3-like domain 626 686 IPR008991 -
Mibi04g2127 808 SUPERFAMILY Protein kinase-like (PK-like) 149 456 IPR011009 -
Mibi04g2127 808 ProSiteProfiles Protein kinase domain profile. 170 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g2127 808 Gene3D - 751 808 IPR012340 -
Mibi04g2127 808 SMART EFP_2 690 744 IPR001059 GO:0003746|GO:0006414
Mibi04g2127 808 FunFam Organellar elongation factor P 618 686 - -
Mibi04g2127 808 FunFam Elongation factor P 751 808 - -
Mibi04g2127 808 Gene3D Transferase(Phosphotransferase) domain 1 253 458 - -
Mibi04g2127 808 Hamap Elongation factor P [efp]. 624 808 IPR011768 GO:0003746|GO:0005737|GO:0006414
Mibi04g2127 808 Gene3D - 618 686 IPR014722 -
Mibi04g2127 808 PANTHER ELONGATION FACTOR P 572 808 IPR020599 -
Mibi04g2127 808 SUPERFAMILY Nucleic acid-binding proteins 690 752 IPR012340 -
Mibi04g2127 808 TIGRFAM efp: translation elongation factor P 626 808 IPR011768 GO:0003746|GO:0005737|GO:0006414
Mibi04g2127 808 Pfam Elongation factor P (EF-P) OB domain 694 744 IPR001059 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g2127 Mibi-ChrMibi04 52954709 52961986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g2127 149 449 Receptor kinase-like Gene Family AT4G02010 38.762 1.20e-58 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Mibi04g2127 PK_Tyr_Ser-Thr 3.2e-25 CL0016