Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi04g2020 | ATGGCCGACTCACATTCTTCTACTACATTTCAACCTCCTCTTCCTTCTTCTTCTTCTTCTAGGGTTCCTTCTGGTTCTGCTGCTTCTTCTTCTTCTACGAATGCAGGATCTTCTCAAGCACGTCGCCAAGACGAAGGTCGAAGAACTCATCATCGTCATCAGAGATCTCAATCATCTGCCCTAGATCAGCGTAATTTGACCGTCATCGAATGGACTCATCAGAATGCTTCTTCTATGGCTAGGGATGATTCTTGGTCCTGCCTTGTTGTTCTTTTCACCTTTTGGTTCTTCGTGTCGATGACTATGATACTTGGAGTTTATGGCTCAATGAATATTCTGCTTAGTCCAAATGCTTCTATTCTTCTCCAGCCTAGCCCTATATTCGTGCAATATATAAAGGTAGAAAACTTATGGTCGAAGCCAGGAGTTATGCTCTATGGTACATATGGAACTCCTGCTCTTGATGCTTTTACTGTTTGGACAGAAACTCGTAATGTAACAGTTCCATCTGATGTGCATAAGGAATGGAAATATTACCTGAATGAAGGGTCTCAAGTAAATATTTCATACCGCATGAGCTCTGGGAGCCCTTCTATTGTTCTTGTAATCGCAGAAGGGAATGAAGGCCTCTCTCAATGGTTGGATGATCCATCATATCCTAATAGCACACTTTCGTGGAGCATAATCCATGGAACTGGTATGATTACACAGGACATATTCAGTACATCGAACTATTATTTGGGACTAGGAAATCTAGATGAGGATGAGGCGGCAGAGGTGGAACTGTCCATCAGAGTAAGATCAGCCATGTATAATACAACAGATGCTTATTACAAATGTACTTTGACTAGTGACCCATGCGGTTTGAAAGTTTTCTTTCCTGATGGGAATGCAGCTGTCTTAACATCTCCTGGACCACAACAGAACTCATCCAGTAATCAGTGGTATATCAAATTGTCCTATGGACCAAGATGGATCACATATATTTTTGGCATGGGTGGATTGACTTTGCTTATGTTTTTGGCCTTCAACTACTGTAACAAGCTGCAGTATTCTCAAGAAGATAGTACAGGAGTTAGACATGAGGGAACAGCACCTCAAAGAGACCCTTTGCTTTCTCACAAAGATGATGATCTTTCCAGCTGGGGTTCATCATATGAATCCCTGTCACAAGATGAGGAGGATCTTGACCTTCTTATAGGGGACACCAATAATGGGAAGTCTTTAGCTGATGGTGAAACCAGTAATAATACAAGGCGCCTTTGTGCAATATGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCTTGTGGACACTGCGCAGCTTGTTTTGAATGTGCAACAAGGTTAGCAGAGGCAGAGGGTACTTGCCCTGTATGCCGTAGGCACATGAAGAAGGTGAGGAAGATATTTACCGTGTAA | 1422 | 0.4262 | MADSHSSTTFQPPLPSSSSSRVPSGSAASSSSTNAGSSQARRQDEGRRTHHRHQRSQSSALDQRNLTVIEWTHQNASSMARDDSWSCLVVLFTFWFFVSMTMILGVYGSMNILLSPNASILLQPSPIFVQYIKVENLWSKPGVMLYGTYGTPALDAFTVWTETRNVTVPSDVHKEWKYYLNEGSQVNISYRMSSGSPSIVLVIAEGNEGLSQWLDDPSYPNSTLSWSIIHGTGMITQDIFSTSNYYLGLGNLDEDEAAEVELSIRVRSAMYNTTDAYYKCTLTSDPCGLKVFFPDGNAAVLTSPGPQQNSSSNQWYIKLSYGPRWITYIFGMGGLTLLMFLAFNYCNKLQYSQEDSTGVRHEGTAPQRDPLLSHKDDDLSSWGSSYESLSQDEEDLDLLIGDTNNGKSLADGETSNNTRRLCAICFDAPRDCFFLPCGHCAACFECATRLAEAEGTCPVCRRHMKKVRKIFTV | 473 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi04g2020 | 473 | ProSiteProfiles | Zinc finger RING-type profile. | 422 | 461 | IPR001841 | - | |
| Mibi04g2020 | 473 | MobiDBLite | consensus disorder prediction | 357 | 379 | - | - | |
| Mibi04g2020 | 473 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Mibi04g2020 | 473 | SUPERFAMILY | RING/U-box | 421 | 467 | - | - | |
| Mibi04g2020 | 473 | FunFam | E3 ubiquitin-protein ligase APD2 | 411 | 472 | - | - | |
| Mibi04g2020 | 473 | PANTHER | OS05G0521000 PROTEIN | 55 | 473 | - | - | |
| Mibi04g2020 | 473 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Mibi04g2020 | 473 | Pfam | Domain of unknown function (DUF4793) | 234 | 341 | IPR032010 | - | |
| Mibi04g2020 | 473 | Pfam | Domain of unknown function (DUF4792) | 143 | 210 | IPR032008 | - | |
| Mibi04g2020 | 473 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 404 | 473 | IPR013083 | - | |
| Mibi04g2020 | 473 | SMART | ring_2 | 422 | 460 | IPR001841 | - | |
| Mibi04g2020 | 473 | Pfam | Zinc finger, C3HC4 type (RING finger) | 419 | 467 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi04g2020 | Mibi-ChrMibi04 | 51253716 | 51258456 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi04g2020 | 395 | 470 | C3H Transcription Factor Family | AT3G06140 | 31.579 | 5.87e-07 | 49.7 |