Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1960 ATGGAGGCTGAAGACGAAAATGGAACCCATATTGAGAGAGATAGAGATCCTGCACCATTTTTTGAGGCCAAGCAGTTATGCTCATGGTCATTCTATCGAGAAGGTATTGCAGAGTTTATGGCCACATTCTTGTTCCTTTACATATCAGTTTTAACAGTCATGGGTGTGGCTTTATCTCCCTCCAAGTGTTCCTCTGTGGGTGTTCAAGGCATTGCTTGGGCATTTGGTGGCATGATCTTTGTTCTTGTTTATTGTACTGCTGATATCTCACGGGGTCACATCAACCCAGCTGTGACCTTTGCCATGTTCTTGGCAAGGAAGATATCACTGACTAGGGCGGTGTTCTACATTGCAATGCAATGCTTGGGAGCTATATGTGGTGTTGCACTTGTGAAAGGATTTGAATCAAGCCATCGGTATGAGAGATTTGGAGGGGGTGCCAATAGTCTCAGTGAAGGATACTCCATAATCAGTGCCCTTGGTGCAGAAATCATTGGCACTTTTGTGCTTGTCTACACTGTCTTCTCAGCCAGTGATGCCCAACTAAGAGCGCATGACGCTCATGTCCCTAAATTGGCACCACTAGCTATTGGGTTTGCTGTATTTCTGGTGCATTTGGCTACAATTCCTATCACAGGGACTGGGATCAACCCTGCTAGAAGTCTGGGTGCAGCACTGATGTTGAACAAGGGTAGAGTTTGGGACGACCATTGGATCTTCTGGGTGGGGCCTTTTCTTGGGGCAGGACTTGCAGCTTTATATCATGAGATAGTGATCAAGACCATGCCCTTCAAGCTTAAGTAA 804 0.4602 MEAEDENGTHIERDRDPAPFFEAKQLCSWSFYREGIAEFMATFLFLYISVLTVMGVALSPSKCSSVGVQGIAWAFGGMIFVLVYCTADISRGHINPAVTFAMFLARKISLTRAVFYIAMQCLGAICGVALVKGFESSHRYERFGGGANSLSEGYSIISALGAEIIGTFVLVYTVFSASDAQLRAHDAHVPKLAPLAIGFAVFLVHLATIPITGTGINPARSLGAALMLNKGRVWDDHWIFWVGPFLGAGLAALYHEIVIKTMPFKLK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1960 267 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Mibi04g1960 267 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 262 IPR034294 -
Mibi04g1960 267 FunFam Probable aquaporin PIP1-2 18 267 - -
Mibi04g1960 267 Pfam Major intrinsic protein 27 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi04g1960 267 SUPERFAMILY Aquaporin-like 25 260 IPR023271 -
Mibi04g1960 267 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi04g1960 267 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi04g1960 267 PRINTS Major intrinsic protein family signature 238 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi04g1960 267 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi04g1960 267 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi04g1960 267 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi04g1960 267 CDD MIP 33 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mibi04g1960 267 Gene3D Glycerol uptake facilitator protein. 18 265 IPR023271 -
Mibi04g1960 267 TIGRFAM MIP: MIP family channel proteins 37 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1960 Mibi-ChrMibi04 50384648 50386722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1960 25 267 Major Intrinsic Protein MIP AT4G23400 74.486 3.89e-132 373