Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1946 ATGATTGTCTCTATGGACTTGAATGCCTCTCCGGTGCCGGAGGAAGATGAGGATATTTTTGAGAGACATATAGAACAGTATATCCAACCAGAAGAACGCATAGAAACTGCAGTTGATATAGCACGTCGGGAGCGTGAAGAAAGGAAAAGGCGGTTGAAAAGAGAACGGACAGATGATAGACCTGCCCATGTAACACAGTCAACAGCTGGTTATGACCAGACCTTTCATGCAAAGTCTCTTAAGTCATATGATAAAAGTAGGCTCCCTCCAGGGTGGTTGGATTGCCCTTCAGTTGGTCAGGAAATATATTGCTTGATACCTTCCAAGGTTCCTCTTGGTGAGTCATTCAATGACTGTATTGCTCCTGGTCGAAGATACTCATTCAAACAAGTGATACATCAACAAAGAGTTCTAGGGAGAAAACTTGGTTTGGTGATTGATCTTACGAATACTACTCGTTACTATCCAGTTTTAGATCTGAAGAAAGAGGGTATCAAGCATATTAAGATTCAATGCAAGGGGCGTGATTCTGTACCTGATAACTTGTCAGTGAATCAATTTGTCCATGAGGTTACTCAGTTTCTATCACGTCAAAAACAAGCAAAGAAGTATATACTCGTCCATTGTACACATGGACATAATCGTACTGGGTACATGATTGTTCATTATCTTATGCGCTCTATGTCTATGTCTGTCACCCAGGCAATTAAAATATTTTCTGAAGCACGCCCTCCAGGAATCTATAAACCTGATTATATTGATGCTTTGTACGCTTTTTATCATGAAAAAAAGCCTGAAATGGTAGTTTGCCCTCCTACACCAGAGTGGAAGAGATCCTCTGAATTTGATCTTAACGGTGAAGCAATGCCAGATGATGATGATGATGATGGAGTGCCAGAACCTCCTCATGAGAACCATGAGACAGATGCCATAATGACAAACGATGATGTTTTGGGAGATGAAATACCTATTGATCAACAAGATGGATTTAGACAGTTCTGTTACCAATCTCTCAAATTGAATTTTGGGGCTAGAGGACACACACATTTTCCAGGTTCACACCCAGTTTCTCTTAATAGGGACAATTTACAATTATTACGACAGCGGTATTATTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGTTAATAACTATGGATGGGTGCTACTTGATTGATAGAAGTTTCAATTTCCGAAGGGTGCAAATGAGGTTTCCATGCAGAGGCTCAAATGATGGTTTGGCTGAGAAGACCCACCATTACACATTACTTGATGGGGAGATGATCATTGATACCCTGCCTGATTCACATAAACAGGAGAGGAGATATCTCATATATGATATGATAGCGATTAACCATGTATCAGTAATAGAGCGACCCTTCTATGAACGGTGGAAGATGCTTGAGAAAGAGGTGATTGAACCTAGAAATCAGGAGCGGCATAATACATACCAGAGCAGAAATCCTTATTACAGATATGACCTGGAACCATTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACCGTAACAAAGCTTTTAAATGAGTTTATTAAGAAACTCTCACATGATGCGGATGGCCTCATATTTCAGGGTTGGGATGATCCTTATGTACCCCGCACTCATGAAGGCCTCCTGAAGTGGAAATATCCTGAGATGAATTCAGTAGATTTTCTCTTTGAGGTTGACGATGATCGCGAGTCACTCTTCCTTAATGAACGAGGAAAGAAGAAACTTATGGAAGGGAATAGGGTTGCATTCAGAGATGGTTCAGATCCCTTGCTTTATTCGGGGAAGATTATAGAGTGTTCGTGGGACTTAAATGAACAGGAATGGGTATACATGCGGACCAGGACAGATAAATCAACTCCAAATGATTTCAATACTTACAAGAAGGTTATGCGGAGTATAAAAGACAACATCACGCAGGATGTCTTGTTGAATGAAATTTATGAGATAATTCGCCTTCCGATGTATGCTGACAGGATAAAGAATGACAGTAAAGCCCACCAGCATACAGGTGCAGCACGCCGGAGGTGA 2049 0.409 MIVSMDLNASPVPEEDEDIFERHIEQYIQPEERIETAVDIARREREERKRRLKRERTDDRPAHVTQSTAGYDQTFHAKSLKSYDKSRLPPGWLDCPSVGQEIYCLIPSKVPLGESFNDCIAPGRRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYPVLDLKKEGIKHIKIQCKGRDSVPDNLSVNQFVHEVTQFLSRQKQAKKYILVHCTHGHNRTGYMIVHYLMRSMSMSVTQAIKIFSEARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAMPDDDDDDGVPEPPHENHETDAIMTNDDVLGDEIPIDQQDGFRQFCYQSLKLNFGARGHTHFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRGSNDGLAEKTHHYTLLDGEMIIDTLPDSHKQERRYLIYDMIAINHVSVIERPFYERWKMLEKEVIEPRNQERHNTYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLNEFIKKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEVDDDRESLFLNERGKKKLMEGNRVAFRDGSDPLLYSGKIIECSWDLNEQEWVYMRTRTDKSTPNDFNTYKKVMRSIKDNITQDVLLNEIYEIIRLPMYADRIKNDSKAHQHTGAARRR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1946 682 Gene3D DNA ligase/mRNA capping enzyme 313 552 - -
Mibi04g1946 682 MobiDBLite consensus disorder prediction 45 62 - -
Mibi04g1946 682 Pfam Dual specificity phosphatase, catalytic domain 140 260 IPR000340 GO:0008138|GO:0016311
Mibi04g1946 682 Pfam mRNA capping enzyme, C-terminal domain 557 650 IPR013846 -
Mibi04g1946 682 SMART dsp_5 122 262 IPR020422 GO:0006470|GO:0008138
Mibi04g1946 682 FunFam mRNA capping enzyme, putative 313 550 - -
Mibi04g1946 682 PANTHER MRNA-CAPPING ENZYME 83 664 - -
Mibi04g1946 682 CDD Adenylation_mRNA_capping 350 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Mibi04g1946 682 PIRSF mRNA_capping_HCE 74 682 IPR017074 GO:0004484|GO:0006370|GO:0140818
Mibi04g1946 682 Gene3D - 553 644 IPR012340 -
Mibi04g1946 682 ProSiteProfiles Dual specificity protein phosphatase domain profile. 115 266 IPR020422 GO:0006470|GO:0008138
Mibi04g1946 682 Gene3D Protein tyrosine phosphatase superfamily 62 283 IPR029021 -
Mibi04g1946 682 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 277 IPR029021 -
Mibi04g1946 682 Coils Coil 38 58 - -
Mibi04g1946 682 FunFam mRNA capping enzyme family protein 551 659 - -
Mibi04g1946 682 FunFam mRNA capping enzyme family protein 84 298 - -
Mibi04g1946 682 MobiDBLite consensus disorder prediction 45 69 - -
Mibi04g1946 682 MobiDBLite consensus disorder prediction 283 309 - -
Mibi04g1946 682 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 185 254 IPR000387 GO:0016311|GO:0016791
Mibi04g1946 682 CDD RNA_5'-triphosphatase 91 257 - -
Mibi04g1946 682 Pfam mRNA capping enzyme, catalytic domain 354 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Mibi04g1946 682 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 315 553 - -
Mibi04g1946 682 SUPERFAMILY Nucleic acid-binding proteins 555 668 IPR012340 -
Mibi04g1946 682 ProSitePatterns Tyrosine specific protein phosphatases active site. 207 217 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1946 Mibi-ChrMibi04 50138815 50153523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1946 1 682 Protein tyrosine phosphatase (PTP) family AT3G09100 70.494 0.0 962