Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1941 ATGCTTCAGATTCGGCTTAGTAAGGTTCCAGCCTCTGAAGGCTTAGCAGGGGCGAAGCTCTCACCTGTTGAGACTGTTACAGTTACTTGTCCCGATCATCTAGTCCTTGCTGATCTTCCTGTAGCAAAGGGCATAGGTTCAGCAGCTGCTACTTCAGTGGTGAAGACTCTTGGCCGTAGATCTCGACGCCAATGTGGTGACTGTGTCCACTTCTGTGTTCGCTGTGACTTCCCAATTGCAATCTATGGACGGCTGAGCCCTTGTGAGCATGCCTTCTGTCTTGATTGTGCAAGAAGTGATTCAATATGCTACCTGTGCGATGAAAGAATCCAGAAAATCCAGACAATCAAAGTGTTAGAAGGAATATTCATCTGTGCAGCTCCTCACTGTTTCAAGTCTTTCCTGAAGAAGTCAGAATTTGAAATGCATATCCAAGATGTACATGCTGACCTTCTCCGGCCCAATGTAGATAAAGAAGATGGGAATGAGTCAGAGACACCTAGTGTTCGGCAATCTGCAATGTCAGATTCTTCTGCTCGAGCTCCCCAAAGGCCTGTCTTCTCTCCTGGTTCAAATTCCCAGCTACATGATCGAGAAGACAAGGCCCGTCAACAACCACCAAGAGACCAACCACCTTCAAGGCCGACTCTACAGCCGAAGGCACCTTCTTTTGGTCAAGTTCAAAATCACTCTGCAGATCTTCATTCTGGCTCAAACGGAGGTATTCCCCAAGGATTCTATCAACAAAGTTCCGACATGCAGCGACCTCCACAAGAATCTTCCCAGTTTACAGACCAGCACCGAGGAGTCACCCCAGAGACACCGCTCCCCGATTATCCACCCATGCATTCCTCCCAGACACCAAATTTCCCAGTACCGGGTAATGTTAACCCAATGTTGAATCCTCCTGGGCCATTTGGTTATCCTCCGTACCCTCCACATGATGGAGCTCCACCATTTTATATGAACCCCTATGATATGCGCTGGCAGGACTCTGCTTCTGAAGGAGGTGGAGACCAGAGTTCCTTGCTTGGTTTTCGGCAGGGTGCTGCAACTGGCCCTAATTTCCCAGCAAATTTTCCCCAGCCCGTGAATGGAGGACCTGGTGGCCCACCTTTTGAACAAGGACATGGTGGTATGGCTATGGATCCACGAGACAGTAAAGGTATATTGGCACCACAGTCCATGCCCCTCCCGCCTCCTCCTCCACCGCCATTGCCGCCCATGTCCCATCTGAACCAGAAATATTATTCAGGTGAGTTTGGACACAATGGACATGGTTATGGTTGGCGGCATGATAATCGTGAAGCATTTGGTGGTCAAGACTAG 1329 0.4929 MLQIRLSKVPASEGLAGAKLSPVETVTVTCPDHLVLADLPVAKGIGSAAATSVVKTLGRRSRRQCGDCVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDERIQKIQTIKVLEGIFICAAPHCFKSFLKKSEFEMHIQDVHADLLRPNVDKEDGNESETPSVRQSAMSDSSARAPQRPVFSPGSNSQLHDREDKARQQPPRDQPPSRPTLQPKAPSFGQVQNHSADLHSGSNGGIPQGFYQQSSDMQRPPQESSQFTDQHRGVTPETPLPDYPPMHSSQTPNFPVPGNVNPMLNPPGPFGYPPYPPHDGAPPFYMNPYDMRWQDSASEGGGDQSSLLGFRQGAATGPNFPANFPQPVNGGPGGPPFEQGHGGMAMDPRDSKGILAPQSMPLPPPPPPPLPPMSHLNQKYYSGEFGHNGHGYGWRHDNREAFGGQD 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1941 442 MobiDBLite consensus disorder prediction 334 348 - -
Mibi04g1941 442 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Mibi04g1941 442 MobiDBLite consensus disorder prediction 166 193 - -
Mibi04g1941 442 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Mibi04g1941 442 MobiDBLite consensus disorder prediction 219 269 - -
Mibi04g1941 442 MobiDBLite consensus disorder prediction 394 410 - -
Mibi04g1941 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 430 IPR040383 GO:0016567|GO:0061630
Mibi04g1941 442 MobiDBLite consensus disorder prediction 426 442 - -
Mibi04g1941 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 121 IPR013083 -
Mibi04g1941 442 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Mibi04g1941 442 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Mibi04g1941 442 MobiDBLite consensus disorder prediction 153 296 - -
Mibi04g1941 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Mibi04g1941 442 MobiDBLite consensus disorder prediction 331 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1941 Mibi-ChrMibi04 50095819 50098433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1941 1 439 C2H2 Transcription Factor Family AT5G01160 44.494 2.41e-102 307