Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1813 ATGCTTCACTTTGATTTTGATTCCCATCACTGCTCTGCTACTAGAGAGGAGAAGATGGCTGAGGGGAAATCAGAGGAGCGTTGCCTGGAGAATAGACAAACTATTGCTGCTTCTAGCTCTTCAATATCTGAAAGTAGTGGCAGTGCTCTACCCAAGTCCCCTGGGATATGTAGCCCAACATCTACATCATCATCTCATCGGAGAACTACTGGCCCTATAAGGCGTGCAAAGGGTGGTTGGACAGCAGAAGAGGATGAGACATTAAGGAATGCTGTTGCAACTTTCAAGGGAAAGAATTGGAAGAAAATAGCCCAGTCTTTCCCCGATAGATCAGAGGTGCAATGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGGCCTTGGACTCAAGAGGAGGATGATAAAATTGTTGAACTTGTGTCAAAATATGGGCCTACAAAATGGTCATTAATAGCCAAGTCCCTGCCTGGTCGAATAGGGAAGCAGTGCCGAGAGCGATGGCACAACCATCTTAATCCTGACATAAAGAAGGATGCCTGGACTTCGGCAGAGGAATTAGCCATCATGGATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTTCTGCCTGGAAGGACTGATAATGCAATAAAGAATCACTGGAATAGTTCACTGAAGAAGAAGATGGACTTTTATTTAACTACCGGACAACTTCCACCAATTTCAAAGATTAGTCCAAAGGTTAATGTCAAAGACAAAATGATATCCTCTGCAACAGAAACAGTTCTTGGCAGTTCAAATAAAGTATTAGATGCAGCTACTGAGACATCGTCAGAAACTACTGAGATTAATAAGCAAGAAGATAGTGGTGAGAATCACTCAAGGCTTTTAGCAACAGCAAGAGATGCTGGTGATTCTTCAAATGTTCTTGCGAATGAATCTGCTGATTCTGACTGTATAGAATGCAAGCCAAAATCTTCCCCTTTAGATTTCAGCTGCAGCAACTCAGAATCAATGTCAAGAGACAATTTTGGAATGAATGGTGAACAAACACATGAGACATGTGGACACAATGGCAAGGCAGCAACTGATCATTGTATAAGTAATAGCAGGTTGACCAAAAAACCTTTTTCACGGGAAGGTCCAACTTGTGGTTCTTTATGTTATGAGCCACCGCAGACGGAGAATTTGGTTCCTTTAGATTCTCTATATTTAGATATCCTTTCTCTCCAAAATGACTACACCTCGACTTCCATGAGGTCTCCTGGTAATTTCACTCCACCTAGTGTGAAGAGTCGGGAATTTTTCAAAATAAGTCCTGAATTAATACTGAAATTGGCTGCTGAAACTTTCCCAAATACCCCTTCCATATTCAGGAAGAAAAGGACTGGAGTTCAGACACAAGCTACTCCCAGTAAAGTTGTGAAAGTTGATGGAGAATCTCATGCTTCTGCTGGTCAGCAGAGAAATAAGAATAATACTGATTCTGAAGTTGGGGGATTCTCTGAGGGTCCAGCAAGCCATGGCAATGGCCTTCCCAATAATAAAATTTTCAATGCATCTCCTCCTTACCGGTTAAGATCCAAGCGAAAAGGAGTTATCAAGTCTGTGGAGAAACAACTTGAGCCTGCATTTGACCAAGAAAAGGACAACGGAATTATGGGGAAGATGGAAAATGGCATATTGCATAAGATTGAAGGCTGGACTTGCAGGTAG 1719 0.4206 MLHFDFDSHHCSATREEKMAEGKSEERCLENRQTIAASSSSISESSGSALPKSPGICSPTSTSSSHRRTTGPIRRAKGGWTAEEDETLRNAVATFKGKNWKKIAQSFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTSAEELAIMDAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKMDFYLTTGQLPPISKISPKVNVKDKMISSATETVLGSSNKVLDAATETSSETTEINKQEDSGENHSRLLATARDAGDSSNVLANESADSDCIECKPKSSPLDFSCSNSESMSRDNFGMNGEQTHETCGHNGKAATDHCISNSRLTKKPFSREGPTCGSLCYEPPQTENLVPLDSLYLDILSLQNDYTSTSMRSPGNFTPPSVKSREFFKISPELILKLAAETFPNTPSIFRKKRTGVQTQATPSKVVKVDGESHASAGQQRNKNNTDSEVGGFSEGPASHGNGLPNNKIFNASPPYRLRSKRKGVIKSVEKQLEPAFDQEKDNGIMGKMENGILHKIEGWTCR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1813 572 MobiDBLite consensus disorder prediction 484 501 - -
Mibi04g1813 572 MobiDBLite consensus disorder prediction 1 30 - -
Mibi04g1813 572 CDD SANT 131 175 IPR001005 -
Mibi04g1813 572 MobiDBLite consensus disorder prediction 31 69 - -
Mibi04g1813 572 Gene3D - 182 252 - -
Mibi04g1813 572 ProSiteProfiles Myb-like domain profile. 176 226 IPR001005 -
Mibi04g1813 572 MobiDBLite consensus disorder prediction 271 294 - -
Mibi04g1813 572 MobiDBLite consensus disorder prediction 463 525 - -
Mibi04g1813 572 SUPERFAMILY Homeodomain-like 78 133 IPR009057 -
Mibi04g1813 572 FunFam Transcriptional activator Myb isoform A 129 181 - -
Mibi04g1813 572 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 123 IPR017930 -
Mibi04g1813 572 Pfam Myb-like DNA-binding domain 181 224 IPR001005 -
Mibi04g1813 572 Pfam Myb-like DNA-binding domain 129 175 IPR001005 -
Mibi04g1813 572 Pfam Myb-like DNA-binding domain 77 123 IPR001005 -
Mibi04g1813 572 FunFam Transcription factor MYB3R-2 182 248 - -
Mibi04g1813 572 ProSiteProfiles Myb-like domain profile. 124 175 IPR001005 -
Mibi04g1813 572 SUPERFAMILY Homeodomain-like 126 222 IPR009057 -
Mibi04g1813 572 MobiDBLite consensus disorder prediction 1 82 - -
Mibi04g1813 572 CDD SANT 80 123 IPR001005 -
Mibi04g1813 572 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 179 IPR017930 -
Mibi04g1813 572 ProSiteProfiles Myb-like domain profile. 72 123 IPR001005 -
Mibi04g1813 572 CDD SANT 183 226 IPR001005 -
Mibi04g1813 572 Gene3D - 129 180 - -
Mibi04g1813 572 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 180 230 IPR017930 -
Mibi04g1813 572 FunFam Transcriptional activator Myb isoform A 76 128 - -
Mibi04g1813 572 Gene3D - 76 128 - -
Mibi04g1813 572 SMART sant 128 177 IPR001005 -
Mibi04g1813 572 SMART sant 76 125 IPR001005 -
Mibi04g1813 572 SMART sant 180 228 IPR001005 -
Mibi04g1813 572 PANTHER MYB PROTEIN-RELATED 77 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1813 Mibi-ChrMibi04 47684395 47692937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1813 16 543 MYB Transcription Factor Family AT3G09370 45.741 1.14e-138 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mibi04g1813 Myb_DNA-binding 2.8e-14 CL0123