Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1785 ATGGAGGTTTCAGTTTCTCTGAAATGTCCATTATTCCTCGTTCTAGTTCTTTCTTTGGCGCTGCTTTTATCTACCGCCAAGCCATTGAACGAGGATGATAATGAGAAAGGCCGTATTGTACAGTCAAGGAATGTAGAAACAGAGAAGTTGCAGAGTTTGAAGAATTATTCATTAATGGCGGAGAGGTTAGATGATGCTCTGAATGAACATGCAGTGGATGATCCAGAGGAGATAGCTTCCATGGTTGATATGAGCATACGCAATCATACTGAAAGAAGAAATTTGGGTTTCTTCTCATGTGTGACTGGAAATCCAATTGATGATTGCTGGCGCTGTGACAAACTCTGGCACAGACGGAGAAAGCGTTTGGCCAATTGTGGAATTGGTTTTGGACGTAATGCCATTGGTGGCCGTGATGGAAGGTTCTATATAGTCACTGATCCAAGAGATGATGACCCTGTGAACCCAAGACCAGGTACCCTACGCCACGCAGTTATCCAAGACAGACCCTTATGGATTGTCTTCAAGAGGGACATGGTTATTACTTTAAAGCAAGAGCTTATAATGAACAGCTTCAAGACCATAGATGGTCGTGGAGTGAATGTGCACATTGCTTATGGTGCTTGCATTACTATACAGTTCATTACCAATGTCATTATCCATGGTTTACATATCCATGACTGTAAGCCCACCGGTAATGCGATGGTTCGTAGCTCGCCAACTCATTATGGTTGGAGAACTATGGCTGATGGAGATGGGATTTCCATCTTTGGTTCAAGCCACATTTGGATTGACCATAACTCACTGTCTAATTGTGCTGATGGACTTATTGATGCAATTATGGGGTCCACTGCTATTACTATTTCCAACAATTACTTCACCCACCACAATGAGGTTATGCTACTGGGTCACAGTGACTCATACGTGAGAGATAAGCAGATGCAGGTAACCATTGCCTACAATCATTTTGGGGAGGGTCTTATCCAAAGAATGCCGAGGTGCAGACATGGGTATTTCCATGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTGATCCTACGATTAACAGCCAAGGCAACCGGTACCTTGCCCCAAGAAACCCTTTTGCTAAGGAGGTGACAAAGAGAGTGGAAACAGACACTAGGATATGGAGGCATTGGAATTGGAGGTCAATGGGAGACCTTATGTTAAATGGAGCCTATTTCACTTCATCAGGAGCAGGTGCTGCAGCAAGCTATGCCAGAGCCTCCAGTTTAGGGGCTAAGTCTTCTTCCATGGTTAGTGTTCTTACTTCTGGAGCTGGTGTTCTTAGCTGCCGCAGGGGCTTCACCTGTTAA 1359 0.4437 MEVSVSLKCPLFLVLVLSLALLLSTAKPLNEDDNEKGRIVQSRNVETEKLQSLKNYSLMAERLDDALNEHAVDDPEEIASMVDMSIRNHTERRNLGFFSCVTGNPIDDCWRCDKLWHRRRKRLANCGIGFGRNAIGGRDGRFYIVTDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPRNPFAKEVTKRVETDTRIWRHWNWRSMGDLMLNGAYFTSSGAGAAASYARASSLGAKSSSMVSVLTSGAGVLSCRRGFTC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1785 452 SMART amb_all 178 375 IPR002022 -
Mibi04g1785 452 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Mibi04g1785 452 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Mibi04g1785 452 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Mibi04g1785 452 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Mibi04g1785 452 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Mibi04g1785 452 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Mibi04g1785 452 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Mibi04g1785 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Mibi04g1785 452 PANTHER PECTATE LYASE 18-RELATED 72 449 IPR045032 GO:0030570
Mibi04g1785 452 SUPERFAMILY Pectin lyase-like 81 446 IPR011050 -
Mibi04g1785 452 FunFam Pectate lyase 103 445 - -
Mibi04g1785 452 Pfam Pectate lyase 187 367 IPR002022 -
Mibi04g1785 452 Gene3D - 103 445 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1785 Mibi-ChrMibi04 47369412 47374142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1785 38 452 Polysaccharide Lyase AT4G13710 77.725 0.0 694