Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1784 ATGGTCTCAATCCAACACGAAGAAACTGAGACCGAAGAGAAATCCGTGAATCCCTCTGAATCTGCGAAGAAAACTGCAAAATCTTCAGCTTCCTCTAATGTCGATGACCATAAAGAAGCTTCTGATGGCTTTGAAACAGCAAGCGACACCGAGCTAGGAAGCGACGCAGAGGATACGCATAAAGAACAACAACAACAACAACAACAACAACAACAACAACAACAAAATCAGCAAAATCAAGAGCTGGGGATTCCTCCTGAGACTGATTCTTCTGAAGAGGCTATACACGATGAGGAATTGAAACAGAAAGCATTGGCTCAAGCAAATGATGCAAAGTTAGAAGGGAATAAGATATTTGGGGAAGGACAATTTGAGGAGGCATTATCAAAGTATGAACTTGCTTTACAAATATCTCCAGATATGCCTTCATCTGTTGAAGTACGCTCAATTTGCCATTCAAACCGTGCTGTATGCTTTATGAAATTGGGTAAATATGAGGACACAATCAAAGAGTGCACTAAGGCATTGGAACTCAATCCTGCCTATCTGAAAGCTCTGGTGAGAAGAGGCGAGGCACATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGACATGAAAAAGATCTTAGAAATTGATACCTCAAATGATCAAGCTAGGAGAACCATCCGGAGATTAGAACCTCTGGCAGCAGAAAAGCGGGAAAAGATGAAGGAAGAAATGATTGGTAAACTGAAAGAAATGGGCAATTCTTTGTTGGGCCGCTTTGGGATGAGCGTTGACAACTTCAAAGCTGTTCAAGATCCAAATACTGGTTCCTATTCCATCTCATTCCAACGCTAA 843 0.4164 MVSIQHEETETEEKSVNPSESAKKTAKSSASSNVDDHKEASDGFETASDTELGSDAEDTHKEQQQQQQQQQQQQQNQQNQELGIPPETDSSEEAIHDEELKQKALAQANDAKLEGNKIFGEGQFEEALSKYELALQISPDMPSSVEVRSICHSNRAVCFMKLGKYEDTIKECTKALELNPAYLKALVRRGEAHEKLEHFEEAIADMKKILEIDTSNDQARRTIRRLEPLAAEKREKMKEEMIGKLKEMGNSLLGRFGMSVDNFKAVQDPNTGSYSISFQR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1784 280 MobiDBLite consensus disorder prediction 30 45 - -
Mibi04g1784 280 Pfam Tetratricopeptide repeat 151 181 IPR001440 GO:0005515
Mibi04g1784 280 MobiDBLite consensus disorder prediction 63 86 - -
Mibi04g1784 280 MobiDBLite consensus disorder prediction 1 91 - -
Mibi04g1784 280 ProSiteProfiles TPR repeat profile. 149 182 IPR019734 GO:0005515
Mibi04g1784 280 Gene3D Tetratricopeptide repeat domain 82 247 IPR011990 GO:0005515
Mibi04g1784 280 MobiDBLite consensus disorder prediction 1 20 - -
Mibi04g1784 280 ProSiteProfiles TPR repeat profile. 108 141 IPR019734 GO:0005515
Mibi04g1784 280 ProSiteProfiles TPR repeat profile. 183 216 IPR019734 GO:0005515
Mibi04g1784 280 SUPERFAMILY TPR-like 107 226 IPR011990 GO:0005515
Mibi04g1784 280 SMART tpr_5 149 182 IPR019734 GO:0005515
Mibi04g1784 280 SMART tpr_5 183 216 IPR019734 GO:0005515
Mibi04g1784 280 SMART tpr_5 108 141 IPR019734 GO:0005515
Mibi04g1784 280 Coils Coil 56 81 - -
Mibi04g1784 280 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 17 280 - -
Mibi04g1784 280 Pfam Tetratricopeptide repeat 184 214 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1784 Mibi-ChrMibi04 47336950 47340770 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1784 76 239 Calmodulin-binding Proteins AT3G25230 33.516 8.33e-14 69.3